Add minimal CI testing on GH Actions (we already have more complete C…

…I on EBRAINS GitLab)

.github/workflows/test.yml

@@ -0,0 +1,35 @@
+name: Test Python client
+
+on:
+  push:
+    branches: [ "api-v3" ]
+
+permissions:
+  contents: read
+
+jobs:
+  test:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python 3.9
+      uses: actions/setup-python@v3
+      with:
+        python-version: "3.9"
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r requirements.txt
+        pip install -r requirements-provider.txt
+        pip install flake8 pytest pytest-cov pytest-mock
+    - name: Lint with flake8
+      run: |
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 nmpi --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 nmpi --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with pytest
+      run: |
+        pytest --cov=nmpi --cov-report=term test/test_mock.py

nmpi/nmpi_user.py

@@ -752,7 +752,7 @@ def send_job_to_kg(self, job_id):
         if is_url(job["code"]):
             # need to distinguish between zip files, Github repos, ...
             raise NotImplementedError("to do")
-            inputs = File, ModelVersionReference, SoftwareVersion
+            ### inputs = File, ModelVersionReference, SoftwareVersion
         else:
             # job code is stored as text within NMPI DB
             # we need to create a Python file within the associated collab