Code

New simplified config format#72

Code

Merged

shauntruelove merged 35 commits intobreaking-improvmentsHopkinsIDD/flepiMoP:breaking-improvmentsfrom config-v3HopkinsIDD/flepiMoP:config-v3Copy head branch name to clipboardOct 9, 2023

+11,602-12,661

Commits

Commits on Sep 28, 2023

• name changes

  jcblemai

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  2df1716

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• template: > method:

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  14c666f

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• updated configs for outcomes

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• config renames, should have been more granular

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• removed the unused interative flag

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• forgot files

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• phasing out simulates for single flies

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• ModelInfo handles the config parsing

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• move dt and integration method contruction to seir.py

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• stacked modifier scenarios are now called modifiers

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• s was never a good name anyway

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Commits on Sep 29, 2023

• remove test that is always run even when there are filters

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• outcomes test passes with the new stytax

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• test_npi passes

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• less dramatics warnings

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• Fixes outcome tests

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  52f671c

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• augmented config to new syntax

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• apparently this file was doing nothing

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• little bugfixes

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• register extension

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Commits on Oct 1, 2023

• baseline_scenario > baseline_modifer

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• handles the test with no seeding2

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Commits on Oct 2, 2023

• intervention_param_name > modifier_parameter

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• distribution: fixed is now implicit when providing directly a numeral value

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• timeserie > timeseries

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• intervention_overlap_operation > stacked_modifier_method

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• duration_name > outcome_prevalence_name

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Commits on Oct 3, 2023

• handle cases with no IC or seeding

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• there as an error in this test config and it was not solvable for alpha. It just worked because it used last config value> fixed

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• seir tests passes

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• simulate.py and black

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• fixes

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• handling more cases of the tree

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• Allow param_from_file to not exist

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Commits on Oct 9, 2023

• Merge branch 'breaking-improvments' into config-v3

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