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Purging data_path from flepiMoP #480

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@emprzy emprzy commented Jan 23, 2025

Describe your changes.

This pull request attempts to remove the deprecated configuration option data_path from flepiMoP code and documentation. I found all instances of "data_path" in flepiMoP via a grep search, so I may have also removed data_path as a CLI option, which I can revert if needed.

Presently, there are still data_path references in the following files for the following reasons:

What does your pull request address? Tag relevant issues.

This pull request addresses GH #472.

@emprzy emprzy changed the base branch from main to dev January 23, 2025 20:17
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emprzy commented Jan 23, 2025

Some files that may be concerned with CLI (rather than config keys) that we may want to revert:

  • post-processing scripts
  • pre-precoessing scripts

@TimothyWillard TimothyWillard added documentation Relating to ReadMEs / gitbook / vignettes / etc. medium priority Medium priority. cli Relating to command line interfaces labels Jan 23, 2025
@TimothyWillard TimothyWillard linked an issue Jan 23, 2025 that may be closed by this pull request
@TimothyWillard TimothyWillard added the next release Marks a PR as a target to include in the next release. label Jan 23, 2025
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I think this looks fine to me, CI passes and purges outdated concept. However, I doubt I'm the best reviewer for this, particularly the post/preprocessing scripts since those exist outside of my knowledge base at the moment. It's also not clear to me that those are commonly used today anyways.

saraloo
saraloo previously approved these changes Jan 24, 2025
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We had practically removed this in operations already so was mainly just documentation and unused functionality in common and config afaik. Rest looks good, thanks

@saraloo saraloo dismissed their stale review January 29, 2025 17:56

FOund a small error in run_sim_processing_SLURM

@emprzy emprzy requested a review from pearsonca February 3, 2025 17:05
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[Refactor]: purge deprecated configuration option data_path
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