Update to new DataFrames syntax (#5)

* update dataframes syntax

* update tests

* add manifest

* add upper compat bounds

* allow unauthenticated R installs

* remove julia 1.0 (no custom registries)

* try to fix mac build CI

* try to fix mac build CI 2

* revert R install on linux

* attempt R package install without su

* Remove julia1.4

* Bump version

* update docs packages

.gitignore

@@ -5,5 +5,4 @@ scratch*
 *.jl.mem
 docs/build/
 docs/site/
-Manifest.toml
 build/

.travis.yml

@@ -4,8 +4,8 @@ os:
   - linux
   - osx
 julia:
-  - 1.1
   - 1.2
+  - 1.3
   - nightly
 notifications:
   email: false
@@ -14,21 +14,23 @@ notifications:
 # (tests will run but not make your overall status red)
 matrix:
  allow_failures:
- - julia: nightly
+ - julia:
+    - 1.4
+    - nightly
 
 before_install:
   # linux
   - if [ "$TRAVIS_OS_NAME" == "linux" ]; then sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9; fi
   - if [ "$TRAVIS_OS_NAME" == "linux" ]; then sudo add-apt-repository -y "deb http://cran.rstudio.com/bin/linux/ubuntu $(lsb_release -s -c)/"; fi
   - if [ "$TRAVIS_OS_NAME" == "linux" ]; then sudo apt-get update -qq -y; fi
-  - if [ "$TRAVIS_OS_NAME" == "linux" ]; then sudo apt-get install git r-base r-base-dev r-recommended -y; fi
+  - if [ "$TRAVIS_OS_NAME" == "linux" ]; then sudo apt-get install git r-base r-base-dev r-recommended -y --allow-unauthenticated; fi
 
   # osx
   # faster than using homebrew/science tap
   # but no permalink to release download
   - if [ "$TRAVIS_OS_NAME" == "osx" ]; then wget "https://cran.rstudio.com/bin/macosx/$(wget -qO- https://cran.rstudio.com/bin/macosx/ | sed -n 's/.*href="\(R-[^"]*.pkg\)".*/\1/p' | head -n 1)"; fi
   - if [ "$TRAVIS_OS_NAME" == "osx" ]; then sudo installer -pkg R-*.pkg -target /; fi
-  - sudo su - -c "R -e \"install.packages('vegan', repos='http://cran.rstudio.com/')\""
+  - sudo R -e "install.packages('vegan', repos='http://cran.rstudio.com/')"
 
 
 # comment the following lines to use the default test script

Manifest.toml

@@ -0,0 +1,350 @@
+# This file is machine-generated - editing it directly is not advised
+
+[[Arpack]]
+deps = ["BinaryProvider", "Libdl", "LinearAlgebra"]
+git-tree-sha1 = "07a2c077bdd4b6d23a40342a8a108e2ee5e58ab6"
+uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
+version = "0.3.1"
+
+[[ArrayLayouts]]
+deps = ["FillArrays", "LinearAlgebra"]
+git-tree-sha1 = "46de2a06a20e59ccd6362c040765fa62893f6451"
+uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
+version = "0.1.3"
+
+[[Base64]]
+uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+
+[[BinaryProvider]]
+deps = ["Libdl", "SHA"]
+git-tree-sha1 = "5b08ed6036d9d3f0ee6369410b830f8873d4024c"
+uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232"
+version = "0.5.8"
+
+[[CSV]]
+deps = ["CategoricalArrays", "DataFrames", "Dates", "FilePathsBase", "LazyArrays", "Mmap", "Parsers", "PooledArrays", "Profile", "Tables", "Unicode", "WeakRefStrings"]
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+uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
+version = "0.5.17"
+
+[[CategoricalArrays]]
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+git-tree-sha1 = "2473560b9c7cb18f98c3c926af0dc7bedccfc7ab"
+uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
+version = "0.7.2"
+
+[[Compat]]
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+git-tree-sha1 = "ed2c4abadf84c53d9e58510b5fc48912c2336fbb"
+uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
+version = "2.2.0"
+
+[[Conda]]
+deps = ["JSON", "VersionParsing"]
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+uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d"
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+
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+uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+version = "0.19.4"
+
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+uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
+version = "0.17.5"
+
+[[DataValueInterfaces]]
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