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Correcting the environment name, and this 2nd note is something that …
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…I needed while following this docs. (#95)
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adRn-s authored Nov 5, 2021
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8 changes: 5 additions & 3 deletions docs/src/gettingstarted.md
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Expand Up @@ -232,14 +232,16 @@ By default, `Conda.jl` puts environments into `~/.julia/conda/envs/<env name>/bi
which you can get with `Conda.bin_dir()`, so in this case, you'd next want to run
```@repl
ENV["PATH"] = ENV["PATH"] * ":" * Conda.bin_dir(:biobakery)
ENV["PATH"] = ENV["PATH"] * ":" * Conda.bin_dir(:BiobakeryUtils)
```
Note: if you need to manually edit `ENV["PATH"]` like this,
Note 1: if you need to manually edit `ENV["PATH"]` like this,
you'll need to do this each time you load julia.
To get around this, you can modify you shell's `$PATH` variable,
or use [`direnv`](https://direnv.net) to set it on a per-directory basis.
Note 2: If following this docs you get ERROR: UndefVarError: Conda not defined` try installing and loading `Conda.jl
## Using MetaPhlAn and HUMAnN
You should now be ready to start using MetaPhlAn and HUMAnN from julia!
Expand Down Expand Up @@ -356,4 +358,4 @@ julia> Conda.add("tbb=2020.2", env; channel="conda-forge")
If your issue isn't addressed here, or you're still having problems,
please [open an issue](https://github.com/BioJulia/BiobakeryUtils.jl/issues/new/choose)
or start a discussion over on [`Microbiome.jl`](https://github.com/BioJulia/Microbiome.jl/discussions/new).
or start a discussion over on [`Microbiome.jl`](https://github.com/BioJulia/Microbiome.jl/discussions/new).

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