-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Automatically generated by python-semantic-release
- Loading branch information
github-actions
committed
Dec 4, 2023
1 parent
de5cfc0
commit 751c7cf
Showing
2 changed files
with
110 additions
and
1 deletion.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -2,6 +2,115 @@ | |
|
|
||
|
|
||
|
|
||
| ## v1.0.0 (2023-12-04) | ||
|
|
||
| ### Breaking | ||
|
|
||
| * fix: Fix Dockerfile | ||
|
|
||
| BREAKING CHANGE: Dummy to trigger 1.0.0 ([`de5cfc0`](https://github.com/EUCANCan/oncoliner/commit/de5cfc0c9cb30dbd8651464584b593811d93464c)) | ||
|
|
||
| ### Feature | ||
|
|
||
| * feat(UI): Prettify tables ([`b009917`](https://github.com/EUCANCan/oncoliner/commit/b009917c5683b94a1531ee9090afce9a60c8e9c6)) | ||
|
|
||
| * feat(UI): Prettify variant callers names ([`aeb8cf8`](https://github.com/EUCANCan/oncoliner/commit/aeb8cf8e7c840620c36d235fdff1e848af744e45)) | ||
|
|
||
| * feat(UI): Add harmonization text and style ([`c67d1c7`](https://github.com/EUCANCan/oncoliner/commit/c67d1c76647795baf1696d8b8731678b6e8eb326)) | ||
|
|
||
| * feat(UI): Add style and text for improvement tab ([`738b3f7`](https://github.com/EUCANCan/oncoliner/commit/738b3f7a1499083cff1549b8ebf8cc9321a07e51)) | ||
|
|
||
| * feat(UI): Add default column ordering ([`6f792fc`](https://github.com/EUCANCan/oncoliner/commit/6f792fcf399af30013dc0b45e33dde87e88083cf)) | ||
|
|
||
| * feat: Add fixed row with the baseline ([`3907eab`](https://github.com/EUCANCan/oncoliner/commit/3907eabed350d85ce2f30e8d30267f93b61af02e)) | ||
|
|
||
| * feat: Add variant callers combinations ([`4fbc459`](https://github.com/EUCANCan/oncoliner/commit/4fbc4595b2de0390fc9600db6d162a29c74469e2)) | ||
|
|
||
| * feat(Harmonization): Add heterogeneity scores ([`91c2907`](https://github.com/EUCANCan/oncoliner/commit/91c29074f3af436133b25ed45fed4c0e962facde)) | ||
|
|
||
| * feat: Add VCF intersect and union tools ([`d4b9686`](https://github.com/EUCANCan/oncoliner/commit/d4b9686e5873443765acab9fff2448f10d28d95e)) | ||
|
|
||
| * feat(UI): Add text to improvement and harmonization ([`6dd652d`](https://github.com/EUCANCan/oncoliner/commit/6dd652dae15194327f474cc30eab724f16d6c6e7)) | ||
|
|
||
| * feat: Add actionable genes ([`d87bcfe`](https://github.com/EUCANCan/oncoliner/commit/d87bcfed8664c6687193e19949d8588e9d1987ff)) | ||
|
|
||
| * feat: Add prunning to harmonization ([`d34155b`](https://github.com/EUCANCan/oncoliner/commit/d34155ba55bb1951a0399c5fc38346035dd6333b)) | ||
|
|
||
| * feat: Add PipelineDesigner prunning ([`e7224d4`](https://github.com/EUCANCan/oncoliner/commit/e7224d4cc659f1c9d5a68959c8a88a439a487ff8)) | ||
|
|
||
| * feat: Add improvement pruning ([`3611188`](https://github.com/EUCANCan/oncoliner/commit/3611188a951324031603ce4ad9b0e971f75af598)) | ||
|
|
||
| * feat: Rework pipeline designer to work with configuration files ([`1b871fd`](https://github.com/EUCANCan/oncoliner/commit/1b871fda092e51aba6b4ba25f7ea795f77aae485)) | ||
|
|
||
| * feat: Rework harmonizator ([`b36e0f9`](https://github.com/EUCANCan/oncoliner/commit/b36e0f914454c9dd9d833f6dc26847b86baee253)) | ||
|
|
||
| * feat: Add variant types parameter for filtering ([`5e6ff2f`](https://github.com/EUCANCan/oncoliner/commit/5e6ff2f28791f8e4452eead8f0c49a5cf6397a29)) | ||
|
|
||
| ### Fix | ||
|
|
||
| * fix(UI): Fix harmonization display ([`6501a55`](https://github.com/EUCANCan/oncoliner/commit/6501a5573e9f5f7abe5b4a80c966f93f16d86023)) | ||
|
|
||
| * fix(UI): Selection in dropdown accordion now displays its hierarchy (#3) | ||
|
|
||
| Co-authored-by: Henri de Soyres <[email protected]> ([`23cea50`](https://github.com/EUCANCan/oncoliner/commit/23cea5053d4ba4678e383baee27988b90edeca6e)) | ||
|
|
||
| * fix(UI): Add clarifications for improvement and harmonization ([`59ab36c`](https://github.com/EUCANCan/oncoliner/commit/59ab36c75b51da2a8b350dbfffe458c0ef42c698)) | ||
|
|
||
| * fix(UI): Fix loading screen not appearing ([`4c88a3a`](https://github.com/EUCANCan/oncoliner/commit/4c88a3ad5250a2fdda6e9e35abbd0d3191575cf6)) | ||
|
|
||
| * fix(UI): Remove callers folders parameter ([`b628991`](https://github.com/EUCANCan/oncoliner/commit/b628991147ab3e379fa29ac5914a0df0822bbaf9)) | ||
|
|
||
| * fix(UI): Hide callers in collapsable for improvement ([`efd2e8b`](https://github.com/EUCANCan/oncoliner/commit/efd2e8be0834ae2267e0b0dad80340cd22871114)) | ||
|
|
||
| * fix: Remove variant callers combinations from repo ([`3489187`](https://github.com/EUCANCan/oncoliner/commit/34891873b4ec75df171745e63c8f5812f699918f)) | ||
|
|
||
| * fix(Assesment): Remove genes from stdout output ([`f9ea399`](https://github.com/EUCANCan/oncoliner/commit/f9ea399aaaf57e41ce7e0abfe95adc28847317bd)) | ||
|
|
||
| * fix(UI): Remove lateral panels in improvement and harmonization (#2) | ||
|
|
||
| * removed left panel for improvement and harmonization views, changed into tab and new component: dropdown tree | ||
|
|
||
| * replaced variant type and size dropdown menu from list to accordion tree | ||
|
|
||
| --------- | ||
|
|
||
| Co-authored-by: Henri de Soyres <[email protected]> ([`a2bc9f9`](https://github.com/EUCANCan/oncoliner/commit/a2bc9f9afe454ce1074f62f6cdf935d7c158bc74)) | ||
|
|
||
| * fix(UI): Improve FP visibility in assesment ([`9b5c62b`](https://github.com/EUCANCan/oncoliner/commit/9b5c62ba9a1695330617b5a9e827551a74caf244)) | ||
|
|
||
| * fix(Harmonizator): Fix misordering of pipelines recomendations ([`2ae66ab`](https://github.com/EUCANCan/oncoliner/commit/2ae66abb9923c07044f10006ffcf280c04709d35)) | ||
|
|
||
| * fix(UI): Remove genes from output tables ([`53bd5b5`](https://github.com/EUCANCan/oncoliner/commit/53bd5b5e8629b846d7acc3f85050c8c4382ce648)) | ||
|
|
||
| * fix: Fix gene aggregation ([`a7dc290`](https://github.com/EUCANCan/oncoliner/commit/a7dc290cdb1d4fad0e125f75620892f138d67a2d)) | ||
|
|
||
| * fix: Fix gene annotation I/O ([`e31f9e1`](https://github.com/EUCANCan/oncoliner/commit/e31f9e15f74f686b6aeeca100487bc1e50459c52)) | ||
|
|
||
| * fix: Fix missing "samples" subfolder in improvement ([`8d3c2a5`](https://github.com/EUCANCan/oncoliner/commit/8d3c2a546763003ab20de3ff0d90b6b78e09d55b)) | ||
|
|
||
| * fix: Fix missing baseline output in improvement ([`b5b7e64`](https://github.com/EUCANCan/oncoliner/commit/b5b7e649ef3434755330d5bbc54f7ba7b854f036)) | ||
|
|
||
| * fix: Remove pandas deprecation warning ([`dbec680`](https://github.com/EUCANCan/oncoliner/commit/dbec6808cc27a30341e142439300c3c9bae8a22c)) | ||
|
|
||
| * fix: Remove extra prints ([`52939bf`](https://github.com/EUCANCan/oncoliner/commit/52939bfb73664859a94ee27783b2ce99bbdbe5a4)) | ||
|
|
||
| * fix: Fix VCFs with mixed chr and non-chr contigs ([`3d4371f`](https://github.com/EUCANCan/oncoliner/commit/3d4371f440134eac96cc917a3885267b622cc352)) | ||
|
|
||
| * fix: Improve input ingestion ([`5eef8bc`](https://github.com/EUCANCan/oncoliner/commit/5eef8bcf7ca777a149fb90e0fa36957b82ca7ef5)) | ||
|
|
||
| ### Performance | ||
|
|
||
| * perf(UI): Use default OS fonts ([`f7e0851`](https://github.com/EUCANCan/oncoliner/commit/f7e0851b132e204ec076fc93110fbd81fdfac3ff)) | ||
|
|
||
| * perf(UI): Improve performance when generating report ([`d0e0228`](https://github.com/EUCANCan/oncoliner/commit/d0e0228e5fc6b779f4966cf2ee2e78aca5088692)) | ||
|
|
||
| * perf: Improve VCF intersection performance ([`3af5c5d`](https://github.com/EUCANCan/oncoliner/commit/3af5c5d0932933b00030bcd18ec3d6892c384d68)) | ||
|
|
||
| ### Unknown | ||
|
|
||
| * deps(UI): Change HTML minify library ([`8c67f1a`](https://github.com/EUCANCan/oncoliner/commit/8c67f1a7045db1e89bc5f83813538861716f14b7)) | ||
|
|
||
|
|
||
| ## v0.1.0 (2023-10-17) | ||
|
|
||
| ### Feature | ||
|
|
||
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1 @@ | ||
| __version__ = "0.1.0" | ||
| __version__ = "1.0.0" |