helper script for running jobs

slurm/scripts/sbatch_run.sh

@@ -11,16 +11,41 @@ read -p "System: " system
 read -p "Algorithm: " algo
 
 # Find potentially matching params files
-parent_dir = $DD_SCRATCH_FOLDER/$DD_OUTPUT_FOLDER/$challenge/$system
+base_dir = $DD_SCRATCH_FOLDER/$DD_OUTPUT_FOLDER
+parent_dir = $base_dir/$challenge/$system
 # List all subdirectories of parent dir
+subdirs = $(find $parent_dir -maxdepth 1 -type d)
+# Find all params.json files in subdirs
+params_files = $(find $subdirs -name "params.json")
+# Replace base_dir from params_files with "experiments/outputs"
+params_files = $(echo $params_files | sed "s|$base_dir|experiments/outputs|g")
+# Print out params files as a numbered list for user to select from
+echo "Found the following params files:"
+for i in "${!params_files[@]}"; do 
+    echo "$i: ${params_files[$i]}"
+done
 
 
+# Ask user to select params file & make sure it is a valid selection
+echo ""
+read -p "Select params file: " params_file_index
+while [[ ! $params_file_index =~ ^[0-9]+$ ]] || [[ $params_file_index -ge ${#params_files[@]} ]]; do
+    echo "Invalid selection. Try again."
+    read -p "Select params file: " params_file_index
+done
+params_file = ${params_files[$params_file_index]}
+echo "Selected params file: $params_file"
+
+# Ask if they want to supply a list of jobs to run
+echo ""
+read -p "List of jobs to run (comma separated, no spaces): " jobs
+
 SUBMIT_SCRIPT="slurm/$DD_CLUSTER/submit.sh"
 #check if the submit script exists
 if [ ! -f "$SUBMIT_SCRIPT" ]; then
   echo -e "${RED} Submit script $SUBMIT_SCRIPT does not exist ${NC}";
   return 0 2> /dev/null || exit 0
 else
     chmod +x $SUBMIT_SCRIPT #make the script executable
-    ./$SUBMIT_SCRIPT "$@" #run the submit script passing all arguments
+    ./$SUBMIT_SCRIPT ${__dir}/../jobscripts/sbatch/run.sbatch $params_file $jobs
 fi