chore: sync project template

.cruft.json

@@ -1,6 +1,6 @@
 {
   "template": "https://github.com/DHARPA-Project/kiara_plugin.develop.git",
-  "commit": "29494cbc7b4f042d1780806a7baf3fe90e344f24",
+  "commit": "3a24ac33e10ccf160aa6beb5486aec151610fd99",
   "context": {
     "cookiecutter": {
       "full_name": "Markus Binsteiner",

.github/workflows/build-darwin.yaml

@@ -2,13 +2,13 @@ name: "darwin tests for 'kiara_plugin.tabular'"
 # This workflow is triggered on pushes to the repository.
 on: [push]
 env:
-  DEVELOPER_DIR: /Applications/Xcode_12.4.app/Contents/Developer
+  DEVELOPER_DIR: /Applications/Xcode_15.4.app/Contents/Developer
   MACOSX_DEPLOYMENT_TARGET: 10.15
 
 jobs:
   test-darwin:
     name: pytest on darwin
-    runs-on: macos-11
+    runs-on: macos-14
     strategy:
       matrix:
         python_version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
@@ -22,7 +22,7 @@ jobs:
         uses: actions/cache@v4
         with:
           path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ matrix.python_version }}
+          key: ${{ runner.os }}-pip-${{ matrix.python_version }}-macos-14
       - uses: actions/checkout@v4
       - name: install kiara_plugin.tabular
         run: pip install -U .[dev_testing]

.pre-commit-config.yaml

@@ -4,39 +4,43 @@ default_language_version:
 repos:
 
 - repo: https://github.com/alessandrojcm/commitlint-pre-commit-hook
-  rev: 'v9.3.0'
+  rev: 'v9.15.0'
   hooks:
     - id: commitlint
       stages: [commit-msg]
       additional_dependencies: ['@commitlint/config-conventional']
 
 - repo: https://github.com/psf/black
-  rev: 22.12.0
+  rev: 24.3.0
   hooks:
     - id: black
 
 - repo: https://github.com/pre-commit/mirrors-mypy
-  rev: 'v1.6.1'  # Use the sha / tag you want to point at
+  rev: 'v1.9.0'  # Use the sha / tag you want to point at
   hooks:
   - id: mypy
     files: "^src/"
     pass_filenames: true
     args: ["--config-file", "pyproject.toml", "--ignore-missing-imports"]
     additional_dependencies: [pydantic>=2.0.0, rich>=10.0.0, ruamel.yaml, anyio>=3.0.0, pyzmq>=22.0.3, bidict, sqlalchemy-stubs, types-python-slugify, types-setuptools, types-python-dateutil, dag_cbor, multiformats, textual, regex, types-pytz, types-orjson]
 
-- repo: https://github.com/charliermarsh/ruff-pre-commit
+- repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: 'v0.1.4'
+  rev: v0.4.1
   hooks:
+    # Run the linter.
     - id: ruff
+      args: [ --fix ]
+    # Run the formatter.
+    #- id: ruff-format
 
 - repo: https://github.com/Kludex/no-optional
   rev: 0.4.0
   hooks:
     - id: no_optional
 
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: 'v4.3.0'
+  rev: 'v4.5.0'
   hooks:
   - id: trailing-whitespace
     exclude: 'setup.cfg'

README.md

@@ -39,7 +39,7 @@ The recommended way to setup a development environment is to use [pixi](https://
 Once you have `pixi` installed, you need to initialize the environment once:
 
 ```
-pixi run install-dev-env
+pixi run install-dev-dependencies
 ```
 
 You also need to do this whenever a depdendency of this plugin is updated (for example the core `kiara` package).
@@ -78,7 +78,7 @@ In most cases it's recommended to use a pixi shell though.
 
 ### Using pre-defined development-related tasks
 
-The included `pixi.toml` file includes some useful tasks that help with development:
+The included `pyproject.toml` file includes some useful tasks that help with development:
 
 - `pixi run pre-commit-check`: runs a set of checks against all files
 - `pixi run tests`: runs the unit tests

pyproject.toml

@@ -73,12 +73,6 @@ dev_testing = [
 dev_utils = [
     "kiara[dev_utils]",
 ]
-dev_all = [
-    "kiara[dev_all]"
-]
-streamlit = [
-    "kiara_plugin.streamlit"
-]
 
 [project.entry-points."kiara.plugin"]
 tabular = "kiara_plugin.tabular"
@@ -257,3 +251,26 @@ module = [
     "appdirs.*",
 ]
 ignore_missing_imports = true
+
+[tool.pixi.project]
+channels = ["dharpa", "conda-forge"]
+platforms = ["linux-64", "win-64", "osx-64", "osx-arm64"]
+
+[tool.pixi.dependencies]
+pip = ">=24.0,<25"
+
+[tool.pixi.pypi-dependencies]
+tabular = { path = ".", editable = true }
+
+[tool.pixi.environments]
+default = { solve-group = "default" }
+#dev = { features = ["dev_utils"], solve-group = "default" }
+
+[tool.pixi.tasks]
+pre-commit-check = "pre-commit run --all-files"
+tests = "py.test"
+mypy = "mypy  --namespace-packages --explicit-package-base src/kiara_plugin/tabular"
+kiara = "kiara"
+show-versions = "kiara --version"
+delete-context = "kiara context delete"
+install-dev-dependencies = "pip install --upgrade -e '.[dev_utils]'"

tests/conftest.py

@@ -16,6 +16,7 @@
 from pathlib import Path
 
 import pytest
+from _pytest.compat import NotSetType
 
 from kiara.api import JobDesc, KiaraAPI
 from kiara.context import KiaraConfig
@@ -40,6 +41,10 @@ def create_temp_dir():
 
 
 def get_job_alias(job_desc: JobDesc) -> str:
+
+    if isinstance(job_desc, NotSetType):
+        return "-- no example jobs --"
+
     return job_desc.job_alias