chore: minor mypy issues

pyproject.toml

@@ -255,5 +255,8 @@ plugins = [
 
 # mypy per-module options:
 [[tool.mypy.overrides]]
-module = ["placholder.dummy.*"]
+module = [
+    "ipydagred3.*",
+    "jupytext.*"
+]
 ignore_missing_imports = true

src/kiara_plugin/jupyter/entrypoints.py

@@ -13,7 +13,6 @@
     find_kiara_renderers_under,
     find_pipeline_base_path_for_module,
 )
-
 from kiara_plugin.jupyter import KIARA_METADATA
 
 find_modules: KiaraEntryPointItem = (

src/kiara_plugin/jupyter/renderers/pipeline.py

@@ -1,7 +1,8 @@
 # -*- coding: utf-8 -*-
-from typing import Any, Iterable, Mapping, Union
+from typing import Any, Iterable, Mapping, MutableMapping, Union
 
 from jinja2 import Template
+
 from kiara.models.module.pipeline.pipeline import Pipeline
 from kiara.renderers import RenderInputsSchema, SourceTransformer
 from kiara.renderers.included_renderers.pipeline import PipelineTransformer
@@ -38,7 +39,7 @@ def assemble_render_inputs(
         self, instance: Any, render_config: RenderInputsSchema
     ) -> Mapping[str, Any]:
 
-        inputs = render_config.dict()
+        inputs: MutableMapping[str, Any] = render_config.model_dump()
         inputs["pipeline"] = instance
         return inputs
 
@@ -49,14 +50,14 @@ def _post_process(self, rendered: str) -> str:
             import jupytext
 
             notebook = jupytext.reads(rendered, fmt="py:percent")
-            converted = jupytext.writes(notebook, fmt="notebook")
+            converted: str = jupytext.writes(notebook, fmt="notebook")
             return converted
         else:
             try:
                 import black
                 from black import Mode  # type: ignore
 
-                cleaned = black.format_str(rendered, mode=Mode())
+                cleaned: str = black.format_str(rendered, mode=Mode())
                 return cleaned
 
             except Exception as e:

src/kiara_plugin/jupyter/utils/__init__.py

@@ -46,12 +46,13 @@ def ensure_kiara_plugins(*plugins, update: bool = False):
     if not update:
         plugin_packages: List[str] = []
         pkgs = [p.replace("_", "-") for p in installed_packages.keys()]
-        for package_name in plugins:
-            if package_name.startswith("git:"):
-                package_name = package_name.replace("git:", "")
+        for _package_name in plugins:
+            if _package_name.startswith("git:"):
+                package_name = _package_name.replace("git:", "")
                 git = True
             else:
                 git = False
+                package_name = _package_name
             package_name = package_name.replace("_", "-")
             if not package_name.startswith("kiara-plugin."):
                 package_name = f"kiara-plugin.{package_name}"

src/kiara_plugin/jupyter/utils/graphs.py

@@ -14,7 +14,7 @@ def graph_widget(
         pipeline = pipeline.structure  # type: ignore
 
     try:
-        import ipydagred3 as ipydagred3
+        import ipydagred3
     except Exception:
         raise Exception(
             "ipydagred3 not available, please install it manually into the current virtualenv"
@@ -37,13 +37,7 @@ def graph_widget(
 
     for edge in graph.edges:
         e = str(edge[0])
-        if e not in nodes_set:
-            print("MISSING")
-            print(e)
         e2 = str(edge[1])
-        if e2 not in nodes_set:
-            print("MISSING 2")
-            print(e2)
         g.setEdge(e, e2)
 
     widget = ipydagred3.DagreD3Widget(graph=g)