PhD Thesis from Francisco Manuel Martín Zamora: Epigenetic regulation of annelid development and life cycle evolution - Supplementary Information
This GitHub repository contains the supplementary data and the custom code used in the thesis described below.
All files are made publicly available and can be used for further research and other applications. However, if you use these resources in your work, I kindly ask you to cite our original publication. Depending on whether you would like to cite the thesis as a whole or only some part of it, I respectfully request you cite the appropriate publication or piece of work.
- To cite the thesis as a whole OR to cite contents from Chapter 4:
Epigenetic regulation of annelid development and life cycle evolution. Francisco Manuel Martín Zamora. October 2023. Queen Mary University of London (London, United Kingdom).
- To cite contents from Chapter 1:
Functional genomics in Spiralia. Francisco M. Martín-Zamora, Billie E Davies, Rory D Donnellan, Kero Guynes, José M Martín-Durán. Briefings in Functional Genomics 22, elad036 (2023). https://doi.org/10.1093/bfgp/elad036
- To cite contents from Chapter 2:
Annelid functional genomics reveal the origins of bilaterian life cycles. Francisco M. Martín-Zamora, Yan Liang, Kero Guynes, Allan M. Carrillo-Baltodano, Billie E. Davies, Rory D. Donellan, Yongkai Tan, Giacomo Moggioli, Océane Seudre, Martin Tran, Kate Mortimer, Nicholas M. Luscombe, Andreas Hejnol, Ferdinand Marlétaz, José M. Martín-Duran. Nature 615, 105–110 (2023). https://doi.org/10.1038/s41586-022-05636-7
- To cite contents from Chapter 3:
Histone-based regulation of annelid development and life cycle heterochronies. Francisco M. Martín-Zamora, Joby Cole, Nancy Ellis, Rory D. Donnellan, Kero Guynes, Allan M. Carrillo-Baltodano, Mark Dickman, Paul J. Hurd, José M. Martín-Durán. Manuscript in preparation.
- Francisco M. Martín-Zamora (PhD Candidate)
- José M. Martín-Durán (Senior Lecturer and primary supervisor)
- Paul J. Hurd (Reader and secondary supervisor)
- Lab website: martinduranlab.com
The files inside this repository are .tar.gz or .xlsx files stored in GitHub Large File Storage (LFS). To view them, select the file you are interested in (e.g. Chapter2_Supplementary_Tables.xlsx), click on Download and the file will be downloaded to your device.
⚠️ Some files are very heavy and download might take time to begin:⚠️ Be patient, they are correctly stored in GitHub Large File Storage (LFS) and your download will eventually start.
- Chapter2_Supplementary_Tables.xlsx contains Chapter 2 Supplementary Tables, that is, Supplementary Tables 2.1 to 2.94.
- Chapter3_Supplementary_Tables.xlsx contains Chapter 3 Supplementary Tables, that is, Supplementary Tables 3.1 to 3.91.
- Martin-Zamora_FM_2023_Brief_Funct_Genom.tar.gz contains all the materials related to the following paper:
Functional genomics in Spiralia. Francisco M. Martín-Zamora, Billie E Davies, Rory D Donnellan, Kero Guynes, José M Martín-Durán. Briefings in Functional Genomics 22, elad036 (2023). https://doi.org/10.1093/bfgp/elad036
- Martin-Zamora_FM_2023_Nature.tar.gz contains all the materials related to the following paper:
Annelid functional genomics reveal the origins of bilaterian life cycles. Francisco M. Martín-Zamora, Yan Liang, Kero Guynes, Allan M. Carrillo-Baltodano, Billie E. Davies, Rory D. Donellan, Yongkai Tan, Giacomo Moggioli, Océane Seudre, Martin Tran, Kate Mortimer, Nicholas M. Luscombe, Andreas Hejnol, Ferdinand Marlétaz, José M. Martín-Duran. Nature 615, 105–110 (2023). https://doi.org/10.1038/s41586-022-05636-7
- Moggioli_G_2023_Nat_Commun.tar.gz contains all the materials related to the following paper:
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms. Giacomo Moggioli, Balig Panossian, Yanan Sun, Daniel Thiel, Francisco M. Martín-Zamora, Martin Tran, Alexander M. Clifford, Shana K. Goffredi, Nadezhda Rimskaya-Korsakova, Gáspár Jékely, Martin Tresguerres, Pei-Yuan Qian, Jian-Wen Qiu, Greg W. Rouse, Lee M. Henry, José M. Martín-Durán. Nature Communications 14, 2814 (2023). https://doi.org/10.1038/s41467-023-38521-6
- Seudre_O_2022_GBE.tar.gz contains all the materials related to the following paper:
The Fox Gene Repertoire in the Annelid Owenia fusiformis| Reveals Multiple Expansions of the foxQ2 Class in Spiralia Océane Seudre, Francisco M. Martín-Zamora, Valentina Rapisarda, Imran Luqman, Allan M. Carrillo-Baltodano, José M. Martín-Durán. Genome Biology and Evolution 14, evac139 (2022). https://doi.org/10.1093/gbe/evac139