Build VTK for PyChaste

scripts/install_boost.sh

@@ -109,21 +109,21 @@ fi
 # https://github.com/boostorg/python/commit/660487c43fde76f3e64f1cb2e644500da92fe582
 if [[ (${major} -eq 1) && (${minor} -le 66) ]]; then  # Boost <= 1.66.x
     cd ${src_dir}/libs/python
-    patch -t -p1 < ${script_dir}/patches/boost_166-python37-unicode-as-string.patch
+    patch -t -p1 < ${script_dir}/patches/boost/1.66/boost_166-python37-unicode-as-string.patch
 fi
 
 # Patch for serialization in Boost <= 1.64.x
 # https://github.com/boostorg/serialization/commit/1d86261581230e2dc5d617a9b16287d326f3e229
 if [[ (${major} -eq 1) && (${minor} -le 64) ]]; then  # Boost <= 1.64.x
     cd ${src_dir}
-    patch -t -p2 < ${script_dir}/patches/boost_164-serialization-array-wrapper.patch
+    patch -t -p2 < ${script_dir}/patches/boost/1.64/boost_164-serialization-array-wrapper.patch
 fi
 
 # Patch for pthread in 1.69.x <= Boost <= 1.72.x
 # https://github.com/boostorg/thread/pull/297/commits/74fb0a26099bc51d717f5f154b37231ce7df3e98
 if [[ (${major} -eq 1) && (${minor} -ge 69) && (${minor} -le 72) ]]; then  # 1.69.x <= Boost <= 1.72.x
     cd ${src_dir}
-    patch -t -p2 < ${script_dir}/patches/boost_169-pthread.patch
+    patch -t -p2 < ${script_dir}/patches/boost/1.69/boost_169-pthread.patch
 fi
 
 # Build and install

scripts/install_vtk.sh

@@ -98,49 +98,128 @@ cd ${base_dir}/src/vtk
 src_dir=$(pwd)/VTK-${version}
 mkdir -p ${src_dir}
 
-if [[ ${major} -lt 6 || (${major} -eq 6 && ${minor} -eq 0) ]]; then  # VTK <= 6.0.x
-    wget -nc http://www.vtk.org/files/release/${major}.${minor}/vtk-${version}.tar.gz
-    tar -xzf vtk-${version}.tar.gz -C ${src_dir} --strip-components=1
+wget -nc https://github.com/Kitware/VTK/archive/v${version}.tar.gz
+tar -xzf v${version}.tar.gz -C ${src_dir} --strip-components=1
 
-else  # VTK > 6.0.x
-    wget -nc https://github.com/Kitware/VTK/archive/v${version}.tar.gz
-    tar -xzf v${version}.tar.gz -C ${src_dir} --strip-components=1
-fi
-
-# VTK 6.3.x patches: https://sources.debian.org/patches/vtk6/6.3.0%2Bdfsg2-8.1/
+# VTK 6.3.x patches: https://sources.debian.org/patches/vtk6/
 if [[ ${major} -eq 6 && ${minor} -eq 3 ]]; then  # VTK == 6.3.x
     cd ${src_dir}
-    patch -t -p1 < ${script_dir}/patches/vtk6.3.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/10_allpatches.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/20_soversion-sharedlib.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/30_matplotlib.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/60_use_system_mpi4py.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/70_fix_ftbfs_gcc49.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/90_gdal-2.0.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/95_ffmpeg_2.9.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/97_fix_latex_doxygen.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/99-hdf5-1.10-compatibility
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/100_javac-heap.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/101_java_install_path.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/105_unforce_embedded_glew.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/106_install_doxygen_scripts_in_nodoc_build.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/108_Doxygen-use-mathjax.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/109_infovis_boost.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/110_remove_nonfree_from_build.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/120_fix_ftbfs_qtpainter.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/3edc0de2b04ae1e100c229e592d6b9fa94f2915a.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/581d9eb874b2b80a3fb21c739a96fa6f955ffb5e.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/new-freetype.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/6.3/vtk6-gcc11-support.patch
 fi
 
-# VTK 7.1.x patches: https://sources.debian.org/patches/vtk7/7.1.1%2Bdfsg2-10.2/
+# VTK 7.1.x patches: https://sources.debian.org/patches/vtk7/
 if [[ ${major} -eq 7 && ${minor} -eq 1 ]]; then  # VTK == 7.1.x
     cd ${src_dir}
-    patch -t -p1 < ${script_dir}/patches/vtk7.1.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/10_allpatches.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/20_soversion-sharedlib.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/30_matplotlib.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/40_use_system_sqlite.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/60_use_system_mpi4py.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/70_fix_ftbfs_gcc49.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/80_fix_arm_compilation.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/99-hdf5-1.10-compatibility
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/100_javac-heap.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/101_java_install_path.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/105_unforce_embedded_glew.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/106_install_doxygen_scripts_in_nodoc_build.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/108_Doxygen-use-mathjax.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/109_java-jar-nonjavafiles.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/110_python-371.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/111_fix_perl.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/112_riscv_support.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/113_fix_python_equal.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/115_support-gcc10.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/mysq8_my_bool.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/3edc0de2b04ae1e100c229e592d6b9fa94f2915a.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/581d9eb874b2b80a3fb21c739a96fa6f955ffb5e.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/gcc-11.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/7.1/ffmpeg-5.patch
 fi
 
-# VTK 8.2.x patches: https://sources.debian.org/patches/vtk7/7.1.1%2Bdfsg2-10.2/
+# VTK 8.1.x patches
+if [[ ${major} -eq 8 && ${minor} -eq 1 ]]; then  # VTK == 8.1.x
+    cd ${src_dir}
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/20_soversion-sharedlib.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/30_matplotlib.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/60_use_system_mpi4py.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/70_vtk8_fix_ftbfs_gcc49.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/100_javac-heap.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/101_java_install_path.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/106_install_doxygen_scripts_in_nodoc_build.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/108_Doxygen-use-mathjax.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/109_java-jar-nonjavafiles.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/110_python-371.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/111_fix_perl.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/112_riscv_support.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/113_vtk8_fix_python_equal.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/115_support-gcc10.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/mysq8_my_bool.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/3edc0de2b04ae1e100c229e592d6b9fa94f2915a.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/581d9eb874b2b80a3fb21c739a96fa6f955ffb5e.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.1/vtk8-gcc-11-exodus.patch
+fi
+
+# VTK 8.2.x patches
 if [[ ${major} -eq 8 && ${minor} -eq 2 ]]; then  # VTK == 8.2.x
     cd ${src_dir}
-    patch -t -p1 < ${script_dir}/patches/vtk8.2.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/20_soversion-sharedlib.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/30_matplotlib.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/60_vtk8_use_system_mpi4py.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/70_vtk8_fix_ftbfs_gcc49.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/100_javac-heap.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/101_java_install_path.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/106_install_doxygen_scripts_in_nodoc_build.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/108_Doxygen-use-mathjax.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/109_java-jar-nonjavafiles.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/110_python-371.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/111_fix_perl.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/112_riscv_support.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/113_vtk8_fix_python_equal.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/115_support-gcc10.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/mysq8_my_bool.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/3edc0de2b04ae1e100c229e592d6b9fa94f2915a.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/581d9eb874b2b80a3fb21c739a96fa6f955ffb5e.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/8.2/vtk8-gcc-11-exodus.patch
 fi
 
-# VTK 9.0.x patches: https://sources.debian.org/patches/vtk9/9.0.1%2Bdfsg1-8/
+# VTK 9.0.x patches: https://sources.debian.org/patches/vtk9/
 if [[ ${major} -eq 9 && ${minor} -eq 0 ]]; then  # VTK == 9.0.x
     cd ${src_dir}
-    patch -t -p1 < ${script_dir}/patches/vtk9.0-fix-limits.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/9.0/50_fix_python-modules_path.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/9.0/70_fix_python_numpy_warning.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/9.0/fix-limits.patch
 fi
 
-# VTK 9.1.x patches: https://sources.debian.org/patches/vtk9/9.1.0%2Breally9.1.0%2Bdfsg2-7.1/
+# VTK 9.1.x patches: https://sources.debian.org/patches/vtk9/
 if [[ ${major} -eq 9 && ${minor} -eq 1 ]]; then  # VTK == 9.1.x
     cd ${src_dir}
     patch -t -p1 < ${script_dir}/patches/vtk/9.1/gcc-13.patch
 fi
 
-# VTK 9.2.x patches: https://sources.debian.org/patches/vtk9/9.1.0%2Breally9.1.0%2Bdfsg2-7.1/
+# VTK 9.2.x patches
 if [[ ${major} -eq 9 && ${minor} -eq 2 ]]; then  # VTK == 9.2.x
     cd ${src_dir}
-    patch -t -p1 < ${script_dir}/patches/vtk/9.1/gcc-13.patch
+    patch -t -p1 < ${script_dir}/patches/vtk/9.2/gcc-13.patch
 fi
 
 # Build and install
@@ -150,14 +229,14 @@ mkdir -p ${install_dir}
 mkdir -p ${src_dir}-build
 cd ${src_dir}-build
 cmake \
-    -DBUILD_SHARED_LIBS=ON \
+    -DCMAKE_BUILD_TYPE=Release \
+    -DCMAKE_INSTALL_PREFIX=${install_dir} \
+    -DCMAKE_INSTALL_RPATH=${install_dir}/lib/vtk-${major}.${minor} \
     -DBUILD_EXAMPLES=OFF \
+    -DBUILD_SHARED_LIBS=ON \
     -DBUILD_TESTING=OFF \
     -DBUILD_DOCUMENTATION=OFF \
     -DVTK_INSTALL_NO_DOCUMENTATION=ON \
-    -DCMAKE_BUILD_TYPE=Release \
-    -DCMAKE_INSTALL_PREFIX=${install_dir} \
-    -DCMAKE_INSTALL_RPATH=${install_dir}/lib/vtk-${major}.${minor} \
     ${src_dir} && \
 make -j ${parallel} && \
 make install

scripts/patches/vtk/6.3/100_javac-heap.patch

@@ -0,0 +1,18 @@
+Description: set JVM max memory to 1024m.
+Author: Matthias Klose <[email protected]>
+Acked-By: Anton Gladky <[email protected]>
+Last-Update: 2016-02-12
+
+Index: VTK-6.3.0/Wrapping/Java/CMakeLists.txt
+===================================================================
+--- VTK-6.3.0.orig/Wrapping/Java/CMakeLists.txt
++++ VTK-6.3.0/Wrapping/Java/CMakeLists.txt
+@@ -80,6 +80,8 @@ if(APPLE)
+   set(JAVAC_OPTIONS -J-Xmx512m)
+ endif()
+
++set(JAVAC_OPTIONS -J-Xmx1024m)
++
+ get_property(java_modules GLOBAL PROPERTY VTK_JAVA_WRAPPED)
+ foreach(module IN LISTS java_modules)
+   if(NOT ${module}_EXCLUDE_FROM_WRAPPING)

scripts/patches/vtk/6.3/101_java_install_path.patch

@@ -0,0 +1,21 @@
+Description: Install Java modules in the correct path
+ This patch corrects the installation of the native Java modules
+ to go to the path given by the Debian Java Policy. This helps
+ to later use the simple install file to get them to the right
+ location in the package. 
+Author: Gert Wollny <[email protected]
+Last-Update: 2016-03-26
+
+Index: VTK-6.3.0/CMake/vtkJavaWrapping.cmake
+===================================================================
+--- VTK-6.3.0.orig/CMake/vtkJavaWrapping.cmake
++++ VTK-6.3.0/CMake/vtkJavaWrapping.cmake
+@@ -79,7 +79,7 @@ function(vtk_add_java_wrapping module_na
+     install(TARGETS ${module_name}Java
+       EXPORT ${VTK_INSTALL_EXPORT_NAME}
+       RUNTIME DESTINATION ${VTK_INSTALL_RUNTIME_DIR} COMPONENT RuntimeLibraries
+-      LIBRARY DESTINATION ${VTK_INSTALL_LIBRARY_DIR} COMPONENT RuntimeLibraries
++      LIBRARY DESTINATION ${VTK_INSTALL_LIBRARY_DIR}/jni COMPONENT RuntimeLibraries
+       ARCHIVE DESTINATION ${VTK_INSTALL_ARCHIVE_DIR} COMPONENT Development)
+   endif()
+ endfunction()

scripts/patches/vtk/6.3/105_unforce_embedded_glew.patch

@@ -0,0 +1,18 @@
+Description: Remove the FORCE from the use_system_glew=off option
+ The embedded version of GLEW seems to be older than the version
+ provided by Debian, so I assume that the fixes have been applied. 
+Author: Gert Wollny <[email protected]> 
+
+Index: VTK-6.3.0/CMakeLists.txt
+===================================================================
+--- VTK-6.3.0.orig/CMakeLists.txt
++++ VTK-6.3.0/CMakeLists.txt
+@@ -207,7 +207,7 @@ else()
+ endif()
+
+ # default to not using the system GLEW as ours has fixes in it right now
+-set(VTK_USE_SYSTEM_GLEW OFF CACHE BOOL "do not use a system glew" FORCE)
++set(VTK_USE_SYSTEM_GLEW OFF CACHE BOOL "do not use a system glew" ON)
+
+ set(VTK_BUILD_SHARED_LIBS ${BUILD_SHARED_LIBS})
+

scripts/patches/vtk/6.3/106_install_doxygen_scripts_in_nodoc_build.patch

@@ -0,0 +1,146 @@
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -546,9 +546,7 @@
+
+ # The doxygen documentation needs to be aware of all modules.
+ option(BUILD_DOCUMENTATION "Build the VTK documentation" OFF)
+-if(BUILD_DOCUMENTATION)
+-  add_subdirectory(Utilities/Doxygen)
+-endif()
++add_subdirectory(Utilities/Doxygen)
+
+ # If python wrapping and testing is enabled then add driver scripts to run
+ # tests.  Note: Many pythong tests used to be automatically converted from TCL
+--- a/Utilities/Doxygen/CMakeLists.txt
++++ b/Utilities/Doxygen/CMakeLists.txt
+@@ -1,69 +1,72 @@
+ #
+ # Build the documentation
+ #
+-find_package(Doxygen REQUIRED)
+-find_package(Perl REQUIRED)
+-find_package(HTMLHelp)
+-
+-option(DOXYGEN_SHORT_NAMES "Build Doxygen of VTK using short file names" OFF)
+-option(DOXYGEN_KEEP_TEMP "Do not delete the temporary Doxygen headers" OFF)
+-option(DOXYGEN_GENERATE_HTMLHELP "Generate HTML help (CHM) files" ON)
+-mark_as_advanced(DOXYGEN_SHORT_NAMES DOXYGEN_KEEP_TEMP DOXYGEN_GENERATE_HTMLHELP)
+-if(DOXYGEN_SHORT_NAMES)
+-  set(DOXYGEN_SHORT_NAMES YES)
+-else()
+-  set(DOXYGEN_SHORT_NAMES NO)
+-endif()
+-if(DOXYGEN_GENERATE_HTMLHELP)
+-  set(DOXYGEN_GENERATE_HTMLHELP YES)
+-else()
+-  set(DOXYGEN_GENERATE_HTMLHELP NO)
+-endif()
+-
+-#
+-# Configure the script and the doxyfile, then add target
+-#
+-set(HAVE_DOT_YESNO NO)
+-if(DOT)
+-  set(HAVE_DOT_YESNO YES)
+-  if(NOT DOT_PATH)
+-    get_filename_component(DOT_PATH ${DOT} PATH)
++if (BUILD_DOCUMENTATION) 
++  find_package(Doxygen REQUIRED)
++  find_package(Perl REQUIRED)
++  find_package(HTMLHelp)
++
++  option(DOXYGEN_SHORT_NAMES "Build Doxygen of VTK using short file names" OFF)
++  option(DOXYGEN_KEEP_TEMP "Do not delete the temporary Doxygen headers" OFF)
++  option(DOXYGEN_GENERATE_HTMLHELP "Generate HTML help (CHM) files" ON)
++  mark_as_advanced(DOXYGEN_SHORT_NAMES DOXYGEN_KEEP_TEMP DOXYGEN_GENERATE_HTMLHELP)
++  if(DOXYGEN_SHORT_NAMES)
++    set(DOXYGEN_SHORT_NAMES YES)
++  else()
++    set(DOXYGEN_SHORT_NAMES NO)
+   endif()
+-endif()
+-
+-# Build up a list of all module source directories. Note that this should be
+-# all source directories and so does not use the normal variables.
+-unset(VTK_MODULE_DIRS_DOXYGEN)
+-file(GLOB src RELATIVE "${VTK_SOURCE_DIR}" "${VTK_SOURCE_DIR}/*/*/module.cmake")
+-foreach(module ${src})
+-  get_filename_component(module_BASE ${module} PATH)
+-  if("${module_BASE}" MATCHES "^Utilities" OR ${module_BASE} MATCHES "^Third")
+-    # Skip the utilities and third parties directories.
++  if(DOXYGEN_GENERATE_HTMLHELP)
++    set(DOXYGEN_GENERATE_HTMLHELP YES)
+   else()
+-    # Use both the source and binary directories, this ensures that
+-    # generated files will be included, but they may then be architecture,
+-    # build configuration and/or compiler specific. All source directories
+-    # are included whether the module is enabled or not.
+-    set(VTK_MODULE_DIRS_DOXYGEN
+-      "${VTK_MODULE_DIRS_DOXYGEN}
++    set(DOXYGEN_GENERATE_HTMLHELP NO)
++  endif()
++  
++  #
++  # Configure the script and the doxyfile, then add target
++  #
++  set(HAVE_DOT_YESNO NO)
++  if(DOT)
++    set(HAVE_DOT_YESNO YES)
++    if(NOT DOT_PATH)
++      get_filename_component(DOT_PATH ${DOT} PATH)
++    endif()
++  endif()
++  
++  # Build up a list of all module source directories. Note that this should be
++  # all source directories and so does not use the normal variables.
++  unset(VTK_MODULE_DIRS_DOXYGEN)
++  file(GLOB src RELATIVE "${VTK_SOURCE_DIR}" "${VTK_SOURCE_DIR}/*/*/module.cmake")
++  foreach(module ${src})
++    get_filename_component(module_BASE ${module} PATH)
++    if("${module_BASE}" MATCHES "^Utilities" OR ${module_BASE} MATCHES "^Third")
++      # Skip the utilities and third parties directories.
++    else()
++      # Use both the source and binary directories, this ensures that
++      # generated files will be included, but they may then be architecture,
++      # build configuration and/or compiler specific. All source directories
++      # are included whether the module is enabled or not.
++      set(VTK_MODULE_DIRS_DOXYGEN
++	"${VTK_MODULE_DIRS_DOXYGEN}
+   \"${VTK_SOURCE_DIR}/${module_BASE}\"
+   \"${VTK_BINARY_DIR}/${module_BASE}\"")
+-  endif()
+-endforeach()
++    endif()
++  endforeach()
++  
++  configure_file(
++    ${VTK_SOURCE_DIR}/Utilities/Doxygen/doxyfile.in
++    ${VTK_BINARY_DIR}/Utilities/Doxygen/doxyfile)
++  
++  configure_file(
++    ${VTK_SOURCE_DIR}/Utilities/Doxygen/doc_makeall.cmake.in
++    ${VTK_BINARY_DIR}/Utilities/Doxygen/doc_makeall.cmake
++    @ONLY)
++  
++  add_custom_target(DoxygenDoc
++    ${CMAKE_COMMAND}
++    -P ${VTK_BINARY_DIR}/Utilities/Doxygen/doc_makeall.cmake
++    DEPENDS ${VTK_BINARY_DIR}/Utilities/Doxygen/doc_makeall.cmake)
+
+-configure_file(
+-  ${VTK_SOURCE_DIR}/Utilities/Doxygen/doxyfile.in
+-  ${VTK_BINARY_DIR}/Utilities/Doxygen/doxyfile)
+-
+-configure_file(
+-  ${VTK_SOURCE_DIR}/Utilities/Doxygen/doc_makeall.cmake.in
+-  ${VTK_BINARY_DIR}/Utilities/Doxygen/doc_makeall.cmake
+-  @ONLY)
+-
+-add_custom_target(DoxygenDoc
+-  ${CMAKE_COMMAND}
+-  -P ${VTK_BINARY_DIR}/Utilities/Doxygen/doc_makeall.cmake
+-  DEPENDS ${VTK_BINARY_DIR}/Utilities/Doxygen/doc_makeall.cmake)
++endif()
+
+ if(NOT VTK_INSTALL_NO_DOCUMENTATION)
+   macro(__vtk_install_documentation_files glob)