Lint and isort

pcpostprocess/detect_ramp_bounds.py

@@ -1,5 +1,6 @@
 import numpy as np
 
+
 def detect_ramp_bounds(times, voltage_sections, ramp_no=0):
     """
     Extract the the times at the start and end of the nth ramp in the protocol.

pcpostprocess/subtraction_plots.py

@@ -1,9 +1,8 @@
-import logging
-
 import numpy as np
-from . leak_correct import fit_linear_leak
 from matplotlib.gridspec import GridSpec
 
+from .leak_correct import fit_linear_leak
+
 
 def setup_subtraction_grid(fig, nsweeps):
     # Use 5 x 2 grid when there are 2 sweeps
@@ -53,7 +52,7 @@ def do_subtraction_plot(fig, times, sweeps, before_currents, after_currents,
         all_leak_params_before.append(before_params)
 
         after_params, _ = fit_linear_leak(before_currents, voltages, times,
-                                           *ramp_bounds)
+                                          *ramp_bounds)
         all_leak_params_after.append(after_params)
 
     # Compute and store leak currents

scripts/run_herg_qc.py

@@ -19,6 +19,7 @@
 from syncropatch_export.trace import Trace
 from syncropatch_export.voltage_protocols import VoltageProtocol
 
+from pcpostprocess.detect_ramp_bounds import detect_ramp_bounds
 from pcpostprocess.hergQC import hERGQC
 from pcpostprocess.infer_reversal import infer_reversal_potential
 from pcpostprocess.leak_correct import fit_linear_leak, get_leak_corrected

tests/test_subtraction_plots.py

@@ -2,11 +2,10 @@
 import unittest
 
 import matplotlib.pyplot as plt
-
 from syncropatch_export.trace import Trace
 
-from pcpostprocess.subtraction_plots import do_subtraction_plot
 from pcpostprocess.detect_ramp_bounds import detect_ramp_bounds
+from pcpostprocess.subtraction_plots import do_subtraction_plot
 
 
 class TestSubtractionPlots(unittest.TestCase):
@@ -44,5 +43,6 @@ def test_do_subtraction_plot(self):
         do_subtraction_plot(fig, times, sweeps, before_current, after_current,
                             voltages, ramp_bounds, well=well)
 
+
 if __name__ == "__main__":
     pass