Salmon Beta 0.3.2
Pre-release
Pre-release
New in this release
- Faster lightweight-alignment (requires rebuilding the index)
- The index is now a dense rather than sparse suffix array-based index. This improves
lightweight mapping speed 30 -- 50%.
- The index is now a dense rather than sparse suffix array-based index. This improves
- Modeling of non-uniform fragment start distribution
- Salmon now learns (by default) a fragment position start distribution to account for systematic
non-uniformity in transcript coverage. This should improve accuracy in datasets exhibiting this
type of behavior. This feature is still experimental and can be disabled with the--noFragStartPosDistflag.
- Salmon now learns (by default) a fragment position start distribution to account for systematic