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COMBINE-lab · Feb 24, 2023 · 332e51f · 332e51f
1 parent 45a9e24
commit 332e51f
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -814,7 +814,7 @@ if (NOT LIBSTADENIO_FOUND)
   endif()
 
   set(FETCHED_STADEN TRUE)
-  set(STADEN_LIBRARIES "${GAT_SOURCE_DIR}/external/install/lib/libhtscodecs.a;${GAT_SOURCE_DIR}/external/install/lib/libstaden-read.a")
+  set(STADEN_LIBRARIES "${GAT_SOURCE_DIR}/external/install/lib/libstaden-read.a;${GAT_SOURCE_DIR}/external/install/lib/libhtscodecs.a")
 endif()
 
 if (ASAN_BUILD)

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
@@ -244,6 +244,7 @@ target_link_libraries(salmon
     ${CURL_LIBRARIES}
     ${ZLIB_LIBRARY}
     m
+    ${STADEN_LIBRARIES} 
     ${LIBLZMA_LIBRARIES}
     ${BZIP2_LIBRARIES}
     ${LIBSALMON_LINKER_FLAGS}
@@ -254,7 +255,6 @@ target_link_libraries(salmon
     ${FAST_MALLOC_LIB}
     TBB::tbb
     TBB::tbbmalloc
-    ${STADEN_LIBRARIES} 
     ${LIBRT}
     ${CMAKE_DL_LIBS}
 )