write fasta straight to Genbank file instead of merging with metadata first#195

Merged

kyleoconnell merged 10 commits intodevfrom dev-patch3-ick4

Apr 9, 2024

+64-92

Commits on Mar 19, 2024

revert BX248355.fasta

Jessica Rowell
authored and
Jessica Rowell
committed
remove the .1 from BS248355.1 in the BX248355.fasta headers and metadata

Jessica Rowell
authored and
Jessica Rowell
committed
make bakta config options the same

Jessica Rowell
authored and
Jessica Rowell
committed
change outputs from fasta_path.getSimpleNAme to meta.id

Jessica Rowell
authored and
Jessica Rowell
committed

Commits on Mar 20, 2024

add option to skip plot and get rid of huge gap before bakta cmd b4 input fasta

Jessica Rowell
authored and
Jessica Rowell
committed

Commits on Mar 22, 2024

remove fx that merges fasta and metadata because it breaks on multicontig fasta files

Jessica Rowell
authored and
Jessica Rowell
committed
fix issue with bakta publish dir

Jessica Rowell
authored and
Jessica Rowell
committed
remove the annoying fasta not required print statement

Jessica Rowell
authored and
Jessica Rowell
committed

Commits on Mar 28, 2024

copy the inpt fasta to submissions dir for direct use by Genbank table2asn instead of mergig with metadata and rewriting

Jessica Rowell
authored and
Jessica Rowell
committed

Commits on Mar 29, 2024

add function to get locus tag from gff3 file

Jessica Rowell
authored and
Jessica Rowell
committed