Code

Params and metadata fix ick4#177

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kyleoconnell merged 12 commits intodevCDCgov/tostadas:devfrom params-and-metadata-fix-ick4CDCgov/tostadas:params-and-metadata-fix-ick4Copy head branch name to clipboardMar 6, 2024

+34,108-14

Commits

Commits on Feb 27, 2024

• move bacteria fasta to sample_fastas/Cdiphtheriae

  

  Jessica Rowell

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  d75cb4b

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• Update .gitignore to not ignore bin/config_files/default_config.yaml

  

  Jessica Rowell

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  e76d2bf

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• Merge branch 'dev' of https://github.com/CDCgov/tostadas into dev

  

  Jessica Rowell

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Commits on Feb 28, 2024

• Merge branch 'dev' of https://github.com/CDCgov/tostadas into dev

  

  Jessica Rowell

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  5ce5db3

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Commits on Feb 29, 2024

• set database to false

  

  Jessica Rowell

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  cf976da

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• match test config to nextflow.config

  

  Jessica Rowell

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  68b41de

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Commits on Mar 1, 2024

• fix variola repeat lib

  

  Jessica Rowell

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  33fa1b6

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• uncomment publish_dir_mode

  

  Jessica Rowell

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  3131b39

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• fasta file had the wrong header inlabel inside, without the _2

  

  Jessica Rowell

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  1cabca1

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Commits on Mar 4, 2024

• fix bakta_gram bakta_complete

  

  Jessica Rowell

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  b5a707a

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Commits on Mar 6, 2024

• fix some extra params in nextflow.config

  

  Jessica Rowell

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  cc7ab13

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• move table2asn to workdir and remove after ruunning initial submission

  

  Jessica Rowell

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  8e52d10

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