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Remove blaze ancillary variables #2

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Oct 18, 2024
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Remove blaze ancillary variables #2

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53 changes: 1 addition & 52 deletions regrid_aus_05x05_to_005x005.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -446,57 +446,6 @@ ncks --overwrite --no-alphabetize -x -v c4frac \
echo "Append c4frac variable to output file"
ncks -A -v c4frac c4frac.nc ${output_file}

modis_igbp_file=${BIOS_PARAM_DIR}/vegtypeigbp_ctr05.nc
echo "modis_igbp_file: ${modis_igbp_file}"

echo "Rename variable vegtypeigbp_ctr05 to modis_igbp"
ncrename --overwrite -v vegtypeigbp_ctr05,modis_igbp \
${modis_igbp_file} modis_igbp.nc

echo "Cast modis_igbp values to int"
ncap2 --overwrite -s "modis_igbp=int(modis_igbp)" modis_igbp.nc modis_igbp.nc

echo "Rename lat-lon coordinate variables and dimensions to latitude-longitude"
ncrename --overwrite \
-d lat,latitude -v lat,latitude \
-d lon,longitude -v lon,longitude \
modis_igbp.nc modis_igbp.nc

echo "Re-order data so that latitude values decrease monotonically from North
to South"
ncpdq --overwrite -a -latitude modis_igbp.nc modis_igbp.nc

echo "Remove modis_igbp variable from output file"
ncks --overwrite --no-alphabetize -x -v modis_igbp \
${output_file} ${output_file}

echo "Append modis_igbp variable to output file"
ncks -A -v modis_igbp modis_igbp.nc ${output_file}

avgannmax_fapar_file=${BIOS_PARAM_DIR}/avgannmaxdata1998-2005_ctr05.nc
echo "avgannmax_fapar_file: ${avgannmax_fapar_file}"

echo "Rename variable avgannmaxdata1998-2005_ctr05 to avgannmax_fapar"
ncrename --overwrite -v avgannmaxdata1998-2005_ctr05,avgannmax_fapar \
${avgannmax_fapar_file} avgannmax_fapar.nc

echo "Rename lat-lon coordinate variables and dimensions to latitude-longitude"
ncrename --overwrite \
-d lat,latitude -v lat,latitude \
-d lon,longitude -v lon,longitude \
avgannmax_fapar.nc avgannmax_fapar.nc

echo "Re-order data so that latitude values decrease monotonically from North
to South"
ncpdq --overwrite -a -latitude avgannmax_fapar.nc avgannmax_fapar.nc

echo "Remove avgannmax_fapar variable from output file"
ncks --overwrite --no-alphabetize -x -v avgannmax_fapar \
${output_file} ${output_file}

echo "Append avgannmax_fapar variable to output file"
ncks -A -v avgannmax_fapar avgannmax_fapar.nc ${output_file}

echo "Clean up"
rm avgannmax_fapar.nc clay.nc modis_igbp.nc sand.nc ssat.nc bch.nc css.nc hyds.nc mvg.nc sfc.nc sucs.nc c4frac.nc rhosoil.nc silt.nc swilt.nc
rm clay.nc sand.nc ssat.nc bch.nc css.nc hyds.nc mvg.nc sfc.nc sucs.nc c4frac.nc rhosoil.nc silt.nc swilt.nc