hdf5: workaround for HPE-MPI bug.

[1uc]

This commit intentionally introduces a leak in HDF5, because HPE-MPI crashes with an double free or corruption error when calling MPI_Type_free.

[bbpbuildbot]

Thank you for your pull request!

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[bbpbuildbot]

To test your PR, use the following on BlueBrain5:

unset MODULEPATH
. /gpfs/bbp.cscs.ch/ssd/apps/bsd/pulls/2203/config/modules.sh
module load unstable

Please test the following updated modules:

• brainbuilder/0.18.7
• brayns/3.4.0
• brayns/3.4.1
• brion/3.3.12
• connectome-tools/0.6.2
• emsim/1.0.2
• hdf5/1.14.0
• highfive/2.8.0
• morpho-kit/0.3.6
• neurodamus-hippocampus/1.8-2.16.6-2.8.1
• neurodamus-mousify/1.6-2.16.6-2.8.1
• neurodamus-neocortex-multiscale/1.13-2.16.6-2.8.1
• neurodamus-neocortex-plasticity/1.13-2.16.6-2.8.1
• neurodamus-neocortex/1.13-2.16.6-2.8.1
• neurodamus-thalamus/1.6-2.16.6-2.8.1
• neuron/9.0.a13
• parquet-converters/0.8.1
• petsc/3.18.1
• placement-algorithm/2.3.1
• psp-validation/0.5.0
• py-atlas-building-tools/0.1.10
• py-bbp-analysis-framework/1.6.42
• py-bcsb/2.1.1
• py-bluecellulab/1.5.2
• py-bluepy/2.5.4
• py-bluepyemodel/0.0.59
• py-bluepymm/0.8.7
• py-bluepyopt/1.14.4
• py-bluepysnap/2.0.2
• py-connectome-manipulator/0.0.9
• py-h5py/3.8.0
• py-libsonata/0.1.24
• py-minis-validation/0.0.5
• py-morph-tool/2.9.1
• py-morphio/3.3.6
• py-neurodamus/2.16.6
• py-neuror/1.6.4
• py-petsc4py/3.18.1
• py-region-grower/1.2.9
• py-slepc4py/3.18.1
• py-synthesis-workflow/1.1.0
• python-dev/0.5
• slepc/3.18.1
• spatial-index/2.1.0
• spykfunc/0.18.4
• synapsetool/0.6.6
• touchdetector/6.0.2

[bbpbuildbot]

To test your PR, use the following on BlueBrain5:

unset MODULEPATH
. /gpfs/bbp.cscs.ch/ssd/apps/bsd/pulls/2203/config/modules.sh
module load unstable

Please test the following updated modules:

• brainbuilder/0.18.7
• brayns/3.4.0
• brayns/3.4.1
• brion/3.3.12
• connectome-tools/0.6.2
• emsim/1.0.2
• hdf5/1.14.0
• highfive/2.8.0
• morpho-kit/0.3.6
• neurodamus-hippocampus/1.8-2.16.6-2.8.1
• neurodamus-mousify/1.6-2.16.6-2.8.1
• neurodamus-neocortex-multiscale/1.13-2.16.6-2.8.1
• neurodamus-neocortex-plasticity/1.13-2.16.6-2.8.1
• neurodamus-neocortex/1.13-2.16.6-2.8.1
• neurodamus-thalamus/1.6-2.16.6-2.8.1
• neuron/9.0.a13
• parquet-converters/0.8.1
• petsc/3.18.1
• placement-algorithm/2.3.1
• psp-validation/0.5.0
• py-atlas-building-tools/0.1.10
• py-bbp-analysis-framework/1.6.42
• py-bcsb/2.1.1
• py-bluecellulab/1.5.2
• py-bluepy/2.5.4
• py-bluepyemodel/0.0.59
• py-bluepymm/0.8.7
• py-bluepyopt/1.14.4
• py-bluepysnap/2.0.2
• py-connectome-manipulator/0.0.9
• py-h5py/3.8.0
• py-libsonata/0.1.24
• py-minis-validation/0.0.5
• py-morph-tool/2.9.1
• py-morphio/3.3.6
• py-neurodamus/2.16.6
• py-neuror/1.6.4
• py-petsc4py/3.18.1
• py-region-grower/1.2.9
• py-slepc4py/3.18.1
• py-synthesis-workflow/1.1.0
• python-dev/0.5
• slepc/3.18.1
• spatial-index/2.1.0
• spykfunc/0.18.4
• synapsetool/0.6.6
• touchdetector/6.0.2

[bbpbuildbot]

To test your PR, use the following on BlueBrain5:

unset MODULEPATH
. /gpfs/bbp.cscs.ch/ssd/apps/bsd/pulls/2203/config/modules.sh
module load unstable

Please test the following updated modules:

• brainbuilder/0.18.7
• brayns/3.4.0
• brayns/3.4.1
• brion/3.3.12
• connectome-tools/0.6.2
• emsim/1.0.2
• hdf5/1.14.0
• highfive/2.8.0
• morpho-kit/0.3.6
• neurodamus-hippocampus/1.8-2.16.6-2.8.1
• neurodamus-mousify/1.6-2.16.6-2.8.1
• neurodamus-neocortex-multiscale/1.13-2.16.6-2.8.1
• neurodamus-neocortex-plasticity/1.13-2.16.6-2.8.1
• neurodamus-neocortex/1.13-2.16.6-2.8.1
• neurodamus-thalamus/1.6-2.16.6-2.8.1
• neuron/9.0.a13
• parquet-converters/0.8.1
• petsc/3.18.1
• placement-algorithm/2.3.1
• psp-validation/0.5.0
• py-atlas-building-tools/0.1.10
• py-bbp-analysis-framework/1.6.42
• py-bcsb/2.1.1
• py-bluecellulab/1.5.2
• py-bluepy/2.5.4
• py-bluepyemodel/0.0.59
• py-bluepymm/0.8.7
• py-bluepyopt/1.14.4
• py-bluepysnap/2.0.2
• py-connectome-manipulator/0.0.9
• py-h5py/3.8.0
• py-libsonata/0.1.24
• py-minis-validation/0.0.5
• py-morph-tool/2.9.1
• py-morphio/3.3.6
• py-neurodamus/2.16.6
• py-neuror/1.6.4
• py-petsc4py/3.18.1
• py-region-grower/1.2.9
• py-slepc4py/3.18.1
• py-synthesis-workflow/1.1.0
• python-dev/0.5
• slepc/3.18.1
• spatial-index/2.1.0
• spykfunc/0.18.4
• synapsetool/0.6.6
• touchdetector/6.0.2

[pramodk]

Looks reasonable! (until we get response/fix from HPE support)