deploy: split nexus out of science environment

bluebrain/deployment/environments/applications_nexus.yaml

@@ -0,0 +1,47 @@
+spack:
+  view: false
+  modules:
+    default:
+      tcl:
+        include:
+          - py-bba-datafetch
+          - py-bba-data-push
+          - py-bba-webexporter
+          - py-bluepyemodel
+          - py-bluepyemodelnexus
+          - py-data-integrity-check
+          - py-nexusforge
+          - py-nexus-sdk
+          - py-token-fetch
+  packages:
+    hdf5:
+      variants: ~mpi+hl
+    highfive:
+      variants: ~mpi
+    libsonata:
+      variants: ~mpi
+    mvdtool:
+      variants: ~mpi
+    netcdf-c:
+      variants: ~mpi
+    proj:
+      variants: ~curl
+    py-h5py:
+      variants: ~mpi
+    vtk:
+      variants: ~mpi~ffmpeg~opengl2
+      # 9.2 release tarball seems broken in the 2023 deployment
+      require: '@:9.0'
+    py-ipyparallel:
+      # otherwise, 6.3 is picked (cheaper setuptools penalty), and things break
+      require: "@8:"
+  specs:
+    - py-bba-datafetch
+    - py-bba-data-push
+    - py-bba-webexporter
+    - py-bluepyemodel
+    - py-bluepyemodelnexus
+    - py-data-integrity-check
+    - py-nexusforge
+    - py-nexus-sdk
+    - py-token-fetch

bluebrain/deployment/environments/applications_science.yaml

@@ -8,23 +8,14 @@ spack:
           - py-atlannot
           - py-atldld
           - py-atlinter
-          - py-bba-datafetch
-          - py-bba-data-push
-          - py-bba-webexporter
           - py-bluecellulab
           - py-bluepyefe
-          - py-bluepyemodel
-          - py-bluepyemodelnexus
           - py-bluepymm
           - py-bluepyopt
           - py-bluepyparallel
           - py-connectome-manipulator
-          - py-data-integrity-check
           - py-efel
-          - py-nexusforge
-          - py-nexus-sdk
           - py-synthesis-workflow
-          - py-token-fetch
           - py-visual-cortex-analysis
   packages:
     hdf5:
@@ -33,45 +24,28 @@ spack:
       variants: ~mpi
     libsonata:
       variants: ~mpi
-    mvdtool:
-      variants: ~mpi
-    netcdf-c:
-      variants: ~mpi
     proj:
       variants: ~curl
     py-h5py:
       variants: ~mpi
-    py-mvdtool:
-      variants: ~mpi
-    vtk:
-      variants: ~mpi~ffmpeg~opengl2
-      # 9.2 release tarball seems broken in the 2023 deployment
-      require: '@:9.0'
     py-ipyparallel:
       # otherwise, 6.3 is picked (cheaper setuptools penalty), and things break
       require: "@8:"
     py-torch:
       require: "@1.13.1"
+    vtk:
+      require: "@:9.0.3"
   specs:
     - py-amici  # BSD-276
     - py-atlannot
     - py-atldld
     - py-atlinter
-    - py-bba-datafetch
-    - py-bba-data-push
-    - py-bba-webexporter
     - py-bluecellulab
     - py-bluepyefe
-    - py-bluepyemodel
-    - py-bluepyemodelnexus
     - py-bluepymm
     - py-bluepyopt
     - py-bluepyparallel
     - py-connectome-manipulator+convert
-    - py-data-integrity-check
     - py-efel
-    - py-nexusforge
-    - py-nexus-sdk
     - py-synthesis-workflow
-    - py-token-fetch
     - py-visual-cortex-analysis

bluebrain/deployment/gitlab-ci.yml

@@ -281,6 +281,9 @@ nse:
 science:
   extends: .spack_stage_applications
 
+nexus:
+  extends: .spack_stage_applications
+
 viz:
   extends: .spack_stage_applications