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B3.1#184

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marwan-abdellah wants to merge 123 commits intomasterBlueBrain/NeuroMorphoVis:masterfrom b3.1BlueBrain/NeuroMorphoVis:b3.1Copy head branch name to clipboard

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Commits

Commits on Feb 20, 2023

• Removing some addons that are not needed anymore.

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  a2f74dc

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• Minor bug fixes.

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  c364ea7

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• Adding a simple utility to visualize color-coded synapses.

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Commits on Feb 21, 2023

• Addign the custom synaptic visualization.

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  e51a059

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• Visualizing excitatory and inhibitory synapses.

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  4974ff3

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• Using dicts instead of lists.

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  97d02ec

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Commits on Feb 22, 2023

• Adding new functions for synapse visualization.

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  4d9e0ec

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Commits on Feb 23, 2023

• Using particle system to visualize large amounts of synapses.

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Commits on Feb 27, 2023

• Minor improvements in the particle system.

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  8f3c859

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• Renaming the synapses add-ons untill further notice.

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  1e1aaed

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• Minor clean ups.

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  a1b84ac

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• Displaying the excitatory and inhibitory synapses.

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  9dae99b

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• Refactoring the synaptics.

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  21f699f

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• Minor fixes.

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  f34adfd

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• Adding option to make unifying radius for all the branches.

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  6d51fd1

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• Minor.

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  9e601e3

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• Visualizing synapses based on pre- and post-synaptic mtypes.

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• Adding the visualization of the etypes as well.

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Commits on Feb 28, 2023

• Adding support to change the colors of the individual arbors of the same type.

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• Adding the synaptic pathways usecase.

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Commits on Mar 1, 2023

• Adjusting the spines orientation.

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  e7870f5

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• Synaptic pathways.

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• Starting to add the synaptics interface.

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Commits on Mar 2, 2023

• Adjusting the synapses loading UI and preparing to the implementation.

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Commits on Mar 6, 2023

• Improving circuit loading and completing the synapse visualization options.

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  a7bca64

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• Further cleanups for the I/O panel.

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  a8b6aa1

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• Minor.

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  13da721

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• Improving the loading mechanism.

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Commits on Mar 7, 2023

• Cleaning the loading.

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• Color coding by types.

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  3bcebf7

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Commits on Mar 8, 2023

• Minor.

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  b07bf86

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• Further use cases and cleanups.

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  82d84cb

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• Adding neuron to the scene with the synapses.

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  21e8480

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• Cleaning the UI.

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  d09fa2d

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• Minor tweaks.

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  b3ff7d6

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• Minor cleanups.

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  committed
  8999201

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• Updating the copyrights.

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  7436611

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Commits on Mar 12, 2023

• Addressing the centering issue.

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  9c9e60a

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Commits on Mar 13, 2023

• Fixing the synaptic pathways.

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Commits on Mar 14, 2023

• Adding the synaptic pair options and synapses counts.

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• Synaptics drawing.

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Commits on Mar 15, 2023

• Refactoring the interface.

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  committed
  bd84de4

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• Refactoring the morphology panel.

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  c9be895

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• Minor.

  haitham-shaban

  committed
  4a89945

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Commits on Mar 16, 2023

• Cleaning the morphology panel.

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  committed
  f15f372

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• Cleanups.

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  committed
  1999ca2

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• More improvements.

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  6ad02c8

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• Collections.

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  f1e21a6

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• Minor.

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  2ea5d18

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Commits on Mar 19, 2023

• Minor.

  haitham-shaban

  committed
  ef80b95

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Commits on Mar 20, 2023

• Resolving the dendrogram issue.

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  ffb970a

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• Adjusting the morphology reconstruction options.

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  b479c37

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• Cleaning the meshing panel.

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  3031bf9

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• Meshing.

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Commits on Mar 21, 2023

• About page.

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• Updating OS.

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• Analysis results.

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  61b2aca

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• Analysis.

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• Refactoring the soma panel.

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• Soma reconstruction.

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Commits on Mar 22, 2023

• Minor updates.

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  1c81345

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Commits on Mar 24, 2023

• Pathways.

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  3cf567a

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• Minor.

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  c220eab

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• Synaptics.

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  c5db0d5

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Commits on Mar 27, 2023

• Synaptics. Target case.

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• Further cleanups, synaptics.

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  bbc8386

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• Rendering scale bar fix.

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• Target.

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• Projection.

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Commits on Mar 28, 2023

• Refactoring the edit panel.

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• Adding libsonata class.

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  6638a9c

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• Edits.

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  64a2d33

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• Minor.

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  8ec2622

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• Adjusting the loading from circuits.

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  beb1116

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• Documenting the BBP circuit.

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  b2c2f6d

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• Cleaning the globals.

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  98d839a

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• Synapse generation.

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  4017740

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• Fixing the soma center issue.

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  79e0c10

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Commits on Mar 29, 2023

• Adding the voxelization builder.

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  99f9fa8

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• Use the soma from the meshing toolbox.

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  4b91433

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• Fixing the soma center issue.

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  committed
  9116e22

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• Adjusting the mesh generation panel.

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  4e73fb8

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• Implemented the connected sections method in the Meshing builders.

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  68e26e0

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• Adding correct references.

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  6bc6ce9

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• Minor.

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• Headers.

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• Dates.

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• Branching ops.

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  9cf9efa

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Commits on Mar 30, 2023

• Refactoring and cleaning the meshing builders.

  haitham-shaban

  committed
  8c20491

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• Minor cleanups.

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  committed
  b9d6786

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Commits on Mar 31, 2023

• Minor additions in the meshing and morphology interface.

  haitham-shaban

  committed
  c3f993b

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Commits on Apr 3, 2023

• Morphology toolbox.

  haitham-shaban

  committed
  b5f71c2

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Commits on Apr 4, 2023

• Minor.

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  committed
  d7feb4e

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Commits on Apr 12, 2023

• Cleaning the material generation and storage.

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  committed
  4788e4a

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Commits on Apr 13, 2023

• Minor.

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  committed
  a445dbc

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Commits on Apr 17, 2023

• Minor.

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  committed
  9e4e94b

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• Cleaning the morphology builder.

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  committed
  c65819a

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• Cleanups.

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  8b06044

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• Adjusting the names of the materials.

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  794397f

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• Adjusting the color.

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  8d1711b

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• Cleanups.

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  committed
  ebaf61d

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• Minor.

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  committed
  360530b

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• Minor.

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  524a8aa

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• Adjusting the MetaBuilder.

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Commits on Apr 18, 2023

• Fixing some issues in the endfeet visualization and mesh geenrators.

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  committed
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Commits on Apr 24, 2023

• Adjusting the morphology format.

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  committed
  c2d5dd4

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• Fixing a few bugs in the mesh builders and the Synaptics.

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  committed
  7ecc3bc

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Commits on Apr 25, 2023

• Meshes interface.

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  ffb925e

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• Minor.

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  674795a

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• Union builder roughness.

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  efaa0e1

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• Adjusting the spine code.

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  committed
  55d5183

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• Spine building.

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  1c22e99

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• Minor.

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  527500a

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Commits on Apr 26, 2023

• Minor adjustment to the union builder.

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  committed
  411d0d3

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Commits on Apr 27, 2023

• Adjusting the circuit spines code.

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  committed
  c59c837

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• Synapses and spines.

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  2ab6ebb

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• Adjusting the synaptics code.

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  committed
  a3121b9

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• Some synaptics issue.

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  0d7e32a

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• Synaptic pathways form script.

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  9ae1f7a

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Commits on May 8, 2023

• Adding a new file to visualize groups of synaptic pathways.

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• Visualize multiple synapses.

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Commits on May 10, 2023

• Fixing the synaptics add-on.

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  committed
  3a146c4

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• Merge branch 'master' into b3.1

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