Add some useability code

Scripting-Tool/environment.yml

@@ -0,0 +1,8 @@
+name: bioschemasmarkupgenerator
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - python
+  - pyyaml
+  - requests

Web-Application/libs/bioschemas/setup.js

@@ -1,7 +1,7 @@
 //GLOBAL VARIABLES
 var editor;
 var dropdownArray = new Array();
-var websiteURL = "https://www.macs.hw.ac.uk/SWeL/BioschemasGenerator"
+var websiteURL = "http://localhost:8080/"
 //JSON Editor Settings
 JSONEditor.defaults.theme = 'bootstrap4';
 JSONEditor.defaults.options["display_required_only"] = true;
@@ -86,7 +86,7 @@ function listOfFiles(websiteURL) {
     $.ajax({
         url: websiteURL,
         success: function (data) {
-            $(data).find("td > a").each(function () {
+            $(data).find("li > a").each(function () {
                 //If file is a JSON Schema file add to list
                 if ((/\.(json)$/i).test($(this).attr("href"))) {
                     fileNames.push($(this).attr("href"));

run_web_application.py

@@ -0,0 +1,44 @@
+#!/usr/bin/env python3
+
+# run the web application using Docker
+
+import argparse
+import os
+import shutil
+import sys
+from shlex import split
+from subprocess import run
+
+def run_scripting_tool():
+    # run the scripting tool to generate the profiles
+    # this requires python3, pyyaml and requests
+    # TODO: write this function
+    pass
+
+def update_profiles():
+    # update the profiles in the Web-Application directory
+    for dir in ['profiles', 'tables', 'draft-profiles', 'draft-tables']:
+        shutil.rmtree(f'Web-Application/{dir}', ignore_errors=True)
+        shutil.copytree(f'Scription-Tool/{dir}', f'Web-Application/{dir}')
+
+
+def run_web_application():
+    # run the web application using Docker
+    cmd_str = f'docker run --rm --name BioschemasMarkupGenerator -p 8080:80 -v {os.getcwd()}/Web-Application:/usr/local/apache2/htdocs httpd'
+    cmd = split(cmd_str)
+    run(cmd)
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser(description='Run the web application using Docker')
+    parser.add_argument('--update_profiles', action='store_true', help='Update the profiles in the Web-Application directory')
+    parser.add_argument('--regenerate_profiles', action='store_true', help='Regenerate the profiles in the Scription-Tool directory')
+    args = parser.parse_args()
+
+    if args.regenerate_profiles:
+        run_scripting_tool()
+        sys.exit(0)
+
+    if args.update_profiles:
+        update_profiles()
+    run_web_application()