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Fix integration tests
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mikekucera committed Mar 14, 2017
1 parent d29eb16 commit 6489a54
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import org.baderlab.csplugins.enrichmentmap.integration.SerialTestTaskManager;
import org.baderlab.csplugins.enrichmentmap.integration.SessionFile;
import org.baderlab.csplugins.enrichmentmap.integration.TestUtils;
import org.baderlab.csplugins.enrichmentmap.model.EMDataSet;
import org.baderlab.csplugins.enrichmentmap.model.EMDataSet.Method;
import org.baderlab.csplugins.enrichmentmap.model.DataSetFiles;
import org.baderlab.csplugins.enrichmentmap.model.EMCreationParameters;
import org.baderlab.csplugins.enrichmentmap.model.EMCreationParameters.GreatFilter;
import org.baderlab.csplugins.enrichmentmap.model.EMCreationParameters.SimilarityMetric;
import org.baderlab.csplugins.enrichmentmap.model.EMDataSet;
import org.baderlab.csplugins.enrichmentmap.model.EMDataSet.Method;
import org.baderlab.csplugins.enrichmentmap.model.EnrichmentMap;
import org.baderlab.csplugins.enrichmentmap.model.EnrichmentMapManager;
import org.baderlab.csplugins.enrichmentmap.model.EnrichmentResult;
Expand Down Expand Up @@ -150,7 +150,7 @@ public void test_1_LoadedLegacyData() throws Exception {
assertEquals(389, dataset.getGeneSetsOfInterest().getGeneSets().size());
// assertEquals(17259, dataset.getSetofgenesets().getGenesets().size()); // MKTODO why? what is this used for
assertEndsWith(dataset.getSetOfGeneSets().getFilename(), "Human_GO_AllPathways_no_GO_iea_April_15_2013_symbol.gmt");
for(long suid : dataset.getNodeSuids().values()) {
for(long suid : dataset.getNodeSuids()) {
assertNotNull(network.getNode(suid));
}

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