Refactor history module db manager

[LuiggiTenorioK]

PR to replace the usage of sqlite3 lib to favor the repositories.

Tasks:

• Remove unused methods
• Add tests to ensure it returns the same content before and after refactoring
• Replace the calls to the Database Manager with the proper repositories
• Remove Database Manager and remove db_version check (schema hasn't changed since Autosubmit 3.13.0)

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 76.13%. Comparing base (09028b6) to head (663a6fe).

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #161      +/-   ##
==========================================
+ Coverage   75.66%   76.13%   +0.47%     
==========================================
  Files          89       88       -1     
  Lines        7643     7501     -142     
==========================================
- Hits         5783     5711      -72     
+ Misses       1860     1790      -70     

Flag	Coverage Δ
fast-tests	76.13% <100.00%> (+0.47%)	⬆️

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[LuiggiTenorioK]

New TODO:

• Ensure job_data and experiment_run tables are created

[LuiggiTenorioK]

New TODO:

• Ensure job_data and experiment_run tables are created

I just remembered that I did test it in a previous PR 🤣