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An opinionated view of the Tidyverse "dialect" of the R language.

TeX 533 47 Updated Dec 26, 2023

Methods for the analyses described in Moody et al. 2024 (https://www.nature.com/articles/s41559-024-02461-1)

Visual Basic 6.0 6 Updated Jul 12, 2024

Genetic taxonomy of influenza A virus subtypes

Python 2 Updated Apr 22, 2024

Flu clade and mutation frequencies

TypeScript 3 3 Updated Aug 26, 2024

SARS-Cov-2 Recombinant Finder for fasta sequences

Python 48 13 Updated Jun 22, 2022

Rapid analysis and visualization of coronavirus genome variation

JavaScript 47 20 Updated Nov 24, 2024

Epidemiological Data from the COVID-19 Epidemic in Canada

R 325 139 Updated May 20, 2022

Alignment viewer for linux terminal

Shell 117 7 Updated Aug 24, 2024

Interactive Visualization of Needleman-Wunsch Algorithm in Javascript

JavaScript 42 17 Updated Dec 24, 2024

Reveal.js with dynamic d3.js graphs

39 14 Updated Nov 21, 2017

Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

Python 14 9 Updated Jan 20, 2025

Coalescent simulation and likelihood for phylodynamic inference

C++ 13 6 Updated Dec 13, 2024

Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework

R 7 2 Updated Feb 19, 2017

Archival and automation of bioinformatic pipelines and data

Python 8 1 Updated Jul 23, 2024

HyPhy: Hypothesis testing using Phylogenies

C++ 3 Updated Apr 13, 2012

HyPhy: Hypothesis testing using Phylogenies

HyPhy 226 69 Updated Jan 7, 2025
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