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An opinionated view of the Tidyverse "dialect" of the R language.
Methods for the analyses described in Moody et al. 2024 (https://www.nature.com/articles/s41559-024-02461-1)
SARS-Cov-2 Recombinant Finder for fasta sequences
Rapid analysis and visualization of coronavirus genome variation
Epidemiological Data from the COVID-19 Epidemic in Canada
Interactive Visualization of Needleman-Wunsch Algorithm in Javascript
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
Coalescent simulation and likelihood for phylodynamic inference
Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework
Archival and automation of bioinformatic pipelines and data
ArtPoon / hyphy
Forked from veg/hyphyHyPhy: Hypothesis testing using Phylogenies