v0.1.2

What's Changed

• Update generated AnnData to match scpca-nf 0.8.5
• Update simulation scripts to use new age columns
• Update metadata in simulations to include project-specific fields
• Mask any tokens in logs

Full Changelog: v0.1.1...v0.1.2

v0.1.1

What's Changed

• Increase default memory for run_scdblfinder in #82

Full Changelog: v0.1.0...v0.1.1

v0.1.0 Initial release

• Initial versioned release of the OpenScPCA-nf Nextflow workflow
• Current modules:
  • example: a very small test module for testing configuration parameters
  • simulate-sce: creates simulated and permuted data for testing here and in OpenScPCA-analysis
  • merge-sce: merges multiple datasets into a single SCE object and corresponding AnnData objects
  • doublet-detection: runs scDblFinder to detect doublets in a dataset
• The default workflow entrypoint currently runs the merge-sce and doublet-detection modules. Other workflow entrypoints are:
  • test to run the example module
  • simulate to run the simulate-sce module
• Includes scripts for running the workflow on AWS batch through Code Deploy