add stub check

.github/workflows/nextflow-stub-check.yml

@@ -0,0 +1,34 @@
+name: Check nextflow stub
+
+on:
+  push:
+    branches:
+      - jashapiro/resourceLimits
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  nf-stub-check:
+    runs-on: ubuntu-latest
+    container: nextflow/nextflow:24.04.2
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Check main workflow
+        run: nextflow run main.nf -stub -profile stub -ansi-log false -log stub-run.log
+
+      - name: Check simulate workflow
+        run: nextflow run main.nf -stub -profile stub -entry simulate -ansi-log false -log simulate-run.log
+
+      - name: Join log files
+        if: ${{ !cancelled() }}
+        run: cat stub-run.log simulate-run.log > nextflow-runs.log
+
+      - name: Upload nextflow log
+        if: ${{ !cancelled() }}
+        uses: actions/upload-artifact@v3
+        with:
+          name: nextflow-log
+          path: nextflow-runs.log

nextflow.config

@@ -6,7 +6,7 @@ manifest {
   mainScript = 'main.nf'
   defaultBranch = 'main'
   version = 'v0.0.1'
-  nextflowVersion = '>=24.04.1'
+  nextflowVersion = '>=24.04.0'
 }
 
 nextflow.enable.moduleBinaries = true