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@sjspielman
sjspielman committed Nov 22, 2024
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8 changes: 4 additions & 4 deletions workshop/SCHEDULE.md
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Expand Up @@ -22,7 +22,7 @@ The planned schedule for the Jan 31-Feb 2, 2023 Data Lab Training Workshop appea
| 2:45 PM | Integrating scRNA-seq Experiments, continued |
| 4:15 PM | Exercises and Questions |
| | [Exercise: Importing CITE-seq data](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq-advanced/exercise_01-citeseq.Rmd) |
| | [Exercise: Cell type assignment](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_03-celltype.Rmd) <br> _This exercise is availbale in the `scRNA-seq` module_ |
| | [Exercise: Cell type assignment](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_03-celltype.Rmd) <br> _This exercise is available in the `scRNA-seq` module_ |
| | Exercise: Evaluating cluster quality |
| | [Exercise: Integration](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq-advanced/exercise_02-integration.Rmd) |
| 5:00 PM | *Adjourn for the day* |
Expand All @@ -36,22 +36,22 @@ The planned schedule for the Jan 31-Feb 2, 2023 Data Lab Training Workshop appea
| 12:30 PM | *Lunch* |
| 1:30 PM | Exercises, Questions, and Independent Projects |
| | [Exercise: Differential Expression](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq-advanced/exercise_03-diffexp.Rmd) |
| | [Resources for consulation sessions](./workshop-resources.md) |
| | [Resources for consultation sessions](./workshop-resources.md) |
| 4:00 PM | *Adjourn for the day* |
| 6:00 PM | Workshop dinner: [Couch Tomato](https://www.thetomatoshack.com/location/The-Couch-Tomato-Cafe-Manayunk/) <br> 102 Rector Street <br> Philadelphia, PA 19127 |
| | |
| **Day 3** | **2024-12-12** |
| 9:00 AM | Questions and Review |
| 9:30 AM | Pathway analysis |
| | Slides |
| | Instruction notebook: Overrepresentation analysis (ORA) |
| | Instruction notebook: Over-representation analysis (ORA) |
| | Instruction notebook: Gene-set enrichment analysis (GSEA) |
| 11:00 AM | *Coffee break* |
| 11:15 AM | Pathway analysis, continued |
| 12:30 PM | *Lunch* |
| 1:30 PM | Exercises, Questions, and Independent Projects |
| | [Exercise: Pathway analysis](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq-advanced/exercise_04-scrna_pathway.Rmd) |
| | [Resources for consulation sessions](./workshop-resources.md) |
| | [Resources for consultation sessions](./workshop-resources.md) |
| 3:00 PM | Participant Presentations! |
| 4:00 PM | *Adjourn* |

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