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Support for PEtab SciML in jax#2614

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FFroehlich wants to merge 39 commits intodevelopAMICI-dev/AMICI:developfrom jax_scimlAMICI-dev/AMICI:jax_scimlCopy head branch name to clipboard

+1,885-140

Commits

Commits on Nov 28, 2024

• add jax serialisation

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• doc

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• no compilation for jax

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• bad ruff

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• Update ExampleJaxPEtab.ipynb

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• bad ruff

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• Update ExampleJaxPEtab.ipynb

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Commits on Nov 30, 2024

• add nan safe log&divide

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Commits on Dec 1, 2024

• merge

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Commits on Dec 2, 2024

• some net cases and first ude testcase passing

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• some more passing ude test

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• updates

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• Merge branch 'develop' into jax_sciml

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• fix merge

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• remove changes doc

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• update net_004_alt test

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Commits on Dec 3, 2024

• refactor to pytests

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• Merge branch 'develop' into jax_sciml

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• Merge branch 'develop' into jax_sciml

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• fixup merge

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• fix net test-cases

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• fixes & remove sciml dependency

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Commits on Dec 6, 2024

• Merge branch 'develop' into jax_sciml

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Commits on Dec 8, 2024

• Merge branch 'develop' into jax_sciml

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• fixup, add initial condition support

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• Update petab.py

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• Update test_petab_sciml.yml

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• Update petab.py

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• Update petab.py

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• Update petab.py

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• Update ExampleJaxPEtab.ipynb

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• ignore test warning

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• Update test_petab_sciml.yml

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• add hybridisation support

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• fix workflow

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Commits on Dec 13, 2024

• Merge branch 'develop' into jax_sciml

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Commits on Dec 19, 2024

• Merge branch 'develop' into jax_sciml

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• update testsuite

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• update after test refactor

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