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Release 0.28.0#2581

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dweindl merged 16 commits intoAMICI-dev:masterAMICI-dev/AMICI:masterfrom dweindl:release_0.28.0dweindl/AMICI:release_0.28.0Copy head branch name to clipboardNov 11, 2024

+575-607

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Commits on Oct 23, 2024

• Add missing simulation status codes (AMICI-dev#2560)

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Commits on Oct 24, 2024

• PEtab import: Fix potentially incorrect sensitivities with state-dependent sigmas (AMICI-dev#2562)

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• Fix benchmark collection gradient check (AMICI-dev#2564)

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• GHA: PYTHONFAULTHANDLER=1 (AMICI-dev#2566)

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• Refactor benchmark collection tests (AMICI-dev#2569)

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Commits on Oct 25, 2024

• Fix problem ID and output in benchmark collection tests (AMICI-dev#2570)

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Commits on Nov 6, 2024

• GHA: Workaround for macos segfaults (AMICI-dev#2572)

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• Check for unsupported observable IDs in sigma expressions (AMICI-dev#2563)

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Commits on Nov 10, 2024

• GHA: require Python3.13 tests to pass (AMICI-dev#2577)

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• Fix potentially incorrect disabling of Newton's method by SteadyStateSensitivityMode::integrationOnly (AMICI-dev#2576)

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• Change default steady-state method to integrationOnly (AMICI-dev#2574)

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• clang-format

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• Optional warning in fill_in_parameters (AMICI-dev#2578)

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• Update codecov config (AMICI-dev#2580)

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• Fix SUNContext in ModelStateDerived copy ctor (AMICI-dev#2583)

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• Update changelog, bump version

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