README.md

PSEA: a phenotype-driven prioritizer for next-generation sequencing with high tolerance to phenotypic noise

Install

1. obtain the source code or install from pip

   git clone https://github.com/zhonghua-wang/psea.git

   or install from pip (TODO)

   pip install psea

2. install requirements (python3)

   pip install requirements.txt

3. Download and build datasets

   python -m psea download-hpo
   python -m psea build # This step may take a few hours

usage

Please refer to the notebook.