These steps sign/issue a certificate based on a certificate signing request (CSR).
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Copy the CSR to the intermediate certificate's directory.
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Generate the new certificate. This will prompt for the intermediate certificate's key passphase.
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example.req-- The CSR. -
example.cert-- The resulting certificate.
openssl ca -config ca.config -in example.req -out example.cert
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Copy the new certificate next to its private key.