NAMESPACE

# Generated by roxygen2: do not edit by hand

export(BarcodeMatch)
export(RunLongcellPre)
export(annotation)
export(cells_genes_isos_count)
export(extractTagBc)
export(fastqMap)
export(gene_umi_count)
export(gtf2bed)
export(init)
export(iso_corres)
export(reads_extract_bc)
export(reads_extraction)
export(umi_count)
export(umi_count_corres)
import(Longcellsrc)
importFrom(BSgenome,getBSgenome)
importFrom(BSgenome,getSeq)
importFrom(GenomicFeatures,exonicParts)
importFrom(GenomicFeatures,exons)
importFrom(GenomicFeatures,exonsBy)
importFrom(GenomicFeatures,makeTxDbFromGFF)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(Longcellsrc,isoform2sites)
importFrom(Matrix,writeMM)
importFrom(NameNeedle,needleScores)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(dbscan,dbscan)
importFrom(dbscan,frNN)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,arrange_at)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,filter_at)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_at)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n)
importFrom(dplyr,reframe)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_all)
importFrom(dplyr,summarise_at)
importFrom(dplyr,ungroup)
importFrom(future,multicore)
importFrom(future,multisession)
importFrom(future,plan)
importFrom(future,sequential)
importFrom(future.apply,future_lapply)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,as_long_data_frame)
importFrom(igraph,cluster_leiden)
importFrom(igraph,crossing)
importFrom(igraph,decompose)
importFrom(igraph,delete_edges)
importFrom(igraph,edge_attr)
importFrom(igraph,graph.mincut)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,simplify)
importFrom(igraph,vertex_attr)
importFrom(magrittr,"%>%")
importFrom(parallel,detectCores)
importFrom(peakRAM,peakRAM)
importFrom(rlang,sym)
importFrom(spgs,reverseComplement)
importFrom(stringi,stri_reverse)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyr,unnest)
importFrom(valr,bed_merge)
importFrom(valr,bed_subtract)