compile_WRF_stampede2.sh

#!/bin/bash

export WRF_SRC_ROOT_DIR=$PWD
cd $WRF_SRC_ROOT_DIR

# Fresh config
./clean -a

# Load system modules
module reset # Should include intel/18.0.2 impi/18.0.2
module load netcdf/4.6.2 pnetcdf/1.11.0 phdf5/1.10.4

export LIBS=${WRF_SRC_ROOT_DIR}/../LIBRARIES
export CC=icc
export CXX=icpc
export FC=ifort
export FCFLAGS=-m64
export F77=ifort
export FFLAGS=-m64
export JASPERLIB=$LIBS/grib2/lib
export JASPERINC=$LIBS/grib2/include
export LDFLAGS=-L$LIBS/grib2/lib
export CPPFLAGS=-I$LIBS/grib2/include

export PATH=${TACC_NETCDF_BIN}:${TACC_PNETCDF_BIN}:$PATH
export NETCDF=${TACC_NETCDF_DIR}
export PNETCDF=${TACC_PNETCDF_DIR}
export PHDF5=${TACC_HDF5_DIR}

export WRFIO_NCD_LARGE_FILE_SUPPORT=1
export WRF_EM_CORE=1
export KMP_STACKSIZE=512m

#export LDFLAGS="-lm -lnetcdff -lnetcdf -L${TACC_NETCDF_LIB}"
export LDFLAGS="-lm -lnetcdff -lnetcdf -L${TACC_PNETCDF_LIB}"

# input 15 (icc/ifort) and 1 (basic nesting) to configure script
echo '15\n1\n' | ./configure

# modifications for Intel 
sed -i -e 's/gcc/icc/' ./configure.wrf

awk -v add=" -L${LIBS}/zlib-1.2.7" '/^ZLIB/ {$0=$0add} 1' configure.wrf > temp && mv temp configure.wrf

# Compile
time ./compile em_real >& compile_em_real.log