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Docker error response from daemon #9

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YenlingPeng opened this issue Nov 11, 2022 · 1 comment
Open

Docker error response from daemon #9

YenlingPeng opened this issue Nov 11, 2022 · 1 comment

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@YenlingPeng
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Hello all,

Sorry, my question may be a bit basic.

After installing the tool through docker, I downloaded reference genome (GRCh38) & CNN model, but it cannot run normally with Docker. Is there a step I missed?

/data2/PB/BiologyTools/SVision is the local path on my side

The execution command is as follows:
`docker run \

       -v "/data2/PB/BiologyTools/SVision":"/container/path" \
       jiadongxjtu/svision:latest \
       -o /container/path/svision_out \
       -b /container/path/supports/HG00733.svision.demo.bam \
       -m /container/path/svision_model/SVision_CNN/svision-cnn-model.ckpt.data-00000-of-00001 \
       -g /container/path/reference/GRCh38_full_analysis_set_plus_decoy_hla.fa \
       -n HG00733 \
       -s 5 \
       --graph \
       --qname`

Screenshot of getting error message:
image

@jiadong324
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Hi,

Thanks for your interest in our tool.

I am sorry that the command should be docker run jiadongxjtu/svision:latest SVision , I will update the README.

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