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AttributeError: 'pysam.libcalignmentfile.AlignmentFile' object has no attribute 'get_index_statistics' #22

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tnnandi opened this issue Jul 23, 2023 · 1 comment
Open

AttributeError: 'pysam.libcalignmentfile.AlignmentFile' object has no attribute 'get_index_statistics' #22

tnnandi opened this issue Jul 23, 2023 · 1 comment

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@tnnandi
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tnnandi commented Jul 23, 2023 •
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Hi,

I'm using the following version of pysam and getting the error: ref_info = aln_file.get_index_statistics(), AttributeError: 'pysam.libcalignmentfile.AlignmentFile' object has no attribute 'get_index_statistics' when I execute ./SVision -o svision_out/ -b ./supports/HG00733.svision.demo.bam -m ../inputs/svision-cnn-model.ckpt -g ../inputs/hg38.no_alt.fa -n HG00733 -s 5 --graph --qname

pysam 0.11.2.2 py36_1 bioconda

Is there a specific version requirement for pysam?
@jiadong324
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Please use pysam>=0.19.1.

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@jiadong324 @tnnandi