python-app.yaml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Python application

on:
  push:
    branches:
      - main
      - master
      - main
      - '*'
  pull_request:
    branches:
      - main
      - master
      - main
      - '*'
  workflow_dispatch:

jobs:
  build:

    runs-on: ubuntu-latest
    services:
      # Label used to access the service container
      postgres:
        # Docker Hub image
        image: postgis/postgis:latest
        # Provide the password for postgres
        env:
          POSTGRES_PASSWORD: postgres
        # Set health checks to wait until postgres has started
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5
        ports:
          # Maps tcp port 5432 on service container to the host
          - 5432:5432

    steps:
    - uses: actions/checkout@v2
    - name: Set up Postgres Usage
      run: |
        echo "localhost:5432:*:postgres:postgres" >> $HOME/.pgpass
        chmod 0600 $HOME/.pgpass
        sudo apt-get install -y postgresql-client
        psql -c 'create database test_gis_fillers;' -U postgres --host localhost
        psql -U postgres --host localhost -c "create extension if not exists postgis;"
    - name: Set up Python 3.9
      uses: actions/setup-python@v2
      with:
        python-version: 3.9
    # - name: Install R
    #   run: |
    #     sudo apt-get -qq update
    #     sudo apt-get -y --allow-unauthenticated install r-base r-base-dev
    #     sudo su - -c "R -q -e \"install.packages('optparse')\""
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install flake8 pytest
        pip install -e git+https://github.com/wschuell/db_fillers.git@main#egg=db_fillers
        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
        sudo apt-get install -y libsqlite3-dev
        pip install codecov pytest-cov
        python setup.py develop
    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test with pytest
      run: |
        pytest --cov=./
    - name: Upload codecov info
      run: |
        codecov