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Hi, Wenjie
Thanks for the amazing tool!
These days I‘ve been trying to convert a PAF file to a CHAIN file using wgatools. When I run the wgatools paf2chain, the chain file is successfully generated. But when I tried to apply liftOver to perform coordinate lift over on a bed file by:
it arises an error: q end mismatch 122108 vs 183202006 line 42 of mPanTro3.pri.cur.chr5_hsa6.humanT2T_chr6.chain.
Is it due to wgatools or just due to something wrong with my paf file? I'm not quite sure about these stuff. The paf, chain and bed file used have been attached here. Thx for your help😘 issue.zip
The text was updated successfully, but these errors were encountered:
Hi, Wenjie
Thanks for the amazing tool!
These days I‘ve been trying to convert a PAF file to a CHAIN file using
wgatools. When I run thewgatools paf2chain, the chain file is successfully generated. But when I tried to applyliftOverto perform coordinate lift over on a bed file by:it arises an error:
q end mismatch 122108 vs 183202006 line 42 of mPanTro3.pri.cur.chr5_hsa6.humanT2T_chr6.chain.
Is it due to wgatools or just due to something wrong with my paf file? I'm not quite sure about these stuff. The paf, chain and bed file used have been attached here. Thx for your help😘
issue.zip
The text was updated successfully, but these errors were encountered: