gitlab-ci.yml

stages:
  - tools
  - journal
  
variables:
  COMPOSE_FILES: --file docker-compose.yml --file docker-compose-gitlab.yml
  
.common:
  tags:
      - shell

tools:
  stage: tools
  extends: 
    - .common
  script:
    - docker login --username "${CI_REGISTRY_USER}" --password "${CI_REGISTRY_PASSWORD}" "${CI_REGISTRY}"
    - docker run -v "$(pwd):/workdir" -v /var/run/docker.sock:/var/run/docker.sock --env CI_COMMIT_REF_NAME="${CI_COMMIT_REF_NAME}" --env CI_PIPELINE_IID="${CI_PIPELINE_IID}" --env CI_COMMIT_TAG="${CI_COMMIT_TAG}" --env CI_REGISTRY_USER="${CI_REGISTRY_USER}" --env CI_REGISTRY_PASSWORD="${CI_REGISTRY_PASSWORD}" --env CI_REGISTRY="${CI_REGISTRY}" --env CI_PROJECT_PATH="${CI_PROJECT_PATH}" ${CI_REGISTRY}/ci-utilities/ci-commands/gitlab-docker-compose-ci gitlab-docker-compose ${COMPOSE_FILES} --cache-from main tools

nature-scirep:
  extends: .common
  stage: journal
  variables:
    KNITR_DRAFT_MODE: "FALSE"
  cache:
    key: knitr
    paths:
      - cache
  script:
    - docker login --username "${CI_REGISTRY_USER}" --password "${CI_REGISTRY_PASSWORD}" "${CI_REGISTRY}"
    - docker-compose ${COMPOSE_FILES} run paper
  artifacts:
    name: "${CI_PROJECT_NAME}-${CI_COMMIT_REF_SLUG}-${CI_COMMIT_SHORT_SHA}-nature-scirep"
    paths:
      - output