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VCell CLI does not output correctly #294

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Tracked by #1046
CodeByDrescher opened this issue Aug 24, 2022 · 2 comments
Closed
Tracked by #1046

VCell CLI does not output correctly #294

CodeByDrescher opened this issue Aug 24, 2022 · 2 comments
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BioSimulators Type: Bug bug report VCell-7.5.0 Needed for Release 7.5

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The omex files in the attached zip raise errors in the Biosimulators Teste Suite, and after inspecting a few of them, the output does not match the expected ouput, as reflected in the HDF5 file (which also contains errors).
@CodeByDrescher CodeByDrescher added Type: Bug bug report BioSimulators VCell-7.5.0 Needed for Release 7.5 labels Aug 24, 2022
@CodeByDrescher CodeByDrescher added this to the Bugs to Squash milestone Aug 24, 2022
@CodeByDrescher CodeByDrescher self-assigned this Aug 24, 2022
@CodeByDrescher CodeByDrescher moved this from Queued to In Progress in vcell development Aug 25, 2022
@CodeByDrescher CodeByDrescher modified the milestones: Bugs to Squash, Adherance to Biosimulators CLI Standard Aug 25, 2022
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Update: The outputs are current correct, and instead the Biosimulation's Test Suite is currently broken.

@CodeByDrescher CodeByDrescher mentioned this issue Aug 30, 2022
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issue: biosimulators/Biosimulators_utils#115 was causing the majority of remaining errors, and after a few recent commits + working around the bug from biosimulators_utils, this issue has been resolved!

Repository owner moved this from In Progress to Done in vcell development Sep 2, 2022
@CodeByDrescher CodeByDrescher moved this from Done to Archive in vcell development Oct 17, 2023
@jcschaff jcschaff moved this from Archive to Done in vcell development Nov 14, 2023
@jcschaff jcschaff mentioned this issue Nov 15, 2023
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BioSimulators Type: Bug bug report VCell-7.5.0 Needed for Release 7.5
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vcell development
Status: Done
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vcell-cli-output-fix virtualcell/vcell
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