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Port over the various extensive test files #21

Closed
4 of 6 tasks
holtgrewe opened this issue Feb 24, 2023 · 2 comments · Fixed by #26, #27 or #31
Closed
4 of 6 tasks

Port over the various extensive test files #21

holtgrewe opened this issue Feb 24, 2023 · 2 comments · Fixed by #26, #27 or #31

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@holtgrewe
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holtgrewe commented Feb 24, 2023 •
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asssembly mapper

  • test_hgvs_variantmapper_near_discrepancies.py

variant mapper

  • test_variantmapper_cp_real.py
  • test_variantmapper_cp_sanity.py
  • test_variantmapper_gcp.py
  • test_clinvar.py
  • test_grammar_full.py
holtgrewe added a commit that referenced this issue Feb 28, 2023
@holtgrewe
feat: porting over test_variantmapper_cp_real (#21)
5352c7d
@holtgrewe holtgrewe linked a pull request Feb 28, 2023 that will close this issue
feat: porting over test_variantmapper_cp_real (#21) #26
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holtgrewe added a commit that referenced this issue Feb 28, 2023
@holtgrewe
feat: porting over test_variantmapper_cp_real (#21) (#26)
6873324
@holtgrewe holtgrewe reopened this Feb 28, 2023
@github-actions github-actions bot mentioned this issue Feb 28, 2023
Merged
holtgrewe added a commit that referenced this issue Feb 28, 2023
@holtgrewe
feat: porting over test_hgvs_variantmapper_gcp (#21)
53c9a91
@holtgrewe holtgrewe linked a pull request Feb 28, 2023 that will close this issue
feat: porting over test_hgvs_variantmapper_gcp (#21) #27
Merged
holtgrewe added a commit that referenced this issue Mar 2, 2023
@holtgrewe
feat: porting over test_hgvs_variantmapper_gcp (#21) (#27)
7f925c8
@holtgrewe holtgrewe reopened this Mar 2, 2023
holtgrewe added a commit that referenced this issue Mar 2, 2023
@holtgrewe
feat: start to port over test_hgvs_grammer_full.py (#21)
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Postponing test_grammar_full.py to #30.

@holtgrewe holtgrewe linked a pull request Mar 2, 2023 that will close this issue
feat: start to port over test_hgvs_grammer_full.py (#21) #31
Merged
holtgrewe added a commit that referenced this issue Mar 2, 2023
@holtgrewe
feat: start to port over test_hgvs_grammer_full.py (#21)
46046ff
holtgrewe added a commit that referenced this issue Mar 2, 2023
@holtgrewe
WIP -- feat: port over clinvar tests (#21)
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The clinvar test case has issues in upstream as well:

holtgrewe added a commit that referenced this issue Mar 2, 2023
@holtgrewe
feat: start to port over test_hgvs_grammer_full.py (#21) (#31)
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@holtgrewe holtgrewe mentioned this issue Mar 2, 2023
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