pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>org.utgenome</groupId>
  <artifactId>utgb-toolkit</artifactId>
  <name>UTGB Toolkit</name>
  <version>1.5.10-SNAPSHOT</version>
  <description>The University of Tokyo Genome Browser (UTGB) Toolkit</description>
  <packaging>pom</packaging>

  <modules>
    <module>utgb-themes</module>
    <module>utgb-core</module>
    <module>utgb-shell</module>
  </modules>

  <properties>
    <gwt.version>2.4.0</gwt.version>
    <sqlite-jdbc.version>3.7.2</sqlite-jdbc.version>
  </properties>

  <inceptionYear>2007</inceptionYear>

  <url>http://utgenome.org/</url>

  <issueManagement>
    <system>Google Code</system>
    <url>http://code.google.com/p/utgb/issues/list</url>
  </issueManagement>

  <ciManagement>
    <system>jenkins</system>
    <url>http://utgenome.org/jenkins</url>
  </ciManagement>

  <mailingLists>
    <mailingList>
      <name>UTGB Users</name>
      <subscribe>http://groups.google.com/group/utgb-users/subscribe?hl=en</subscribe>
      <post>http://groups.google.com/group/utgb-users/post?hl=en</post>
      <archive>http://groups.google.com/group/utgb-users?hl=en</archive>
    </mailingList>
    <mailingList>
      <name>UTGB Users JP</name>
      <subscribe>http://groups.google.com/group/utgb-users-jp/subscribe?hl=en</subscribe>
      <post>http://groups.google.com/group/utgb-users-jp/post?hl=en</post>
      <archive>http://groups.google.com/group/utgb-users-jp?hl=en</archive>
    </mailingList>
    <mailingList>
      <name>UTGB Deverlopers</name>
      <subscribe>http://groups.google.com/group/utgb/subscribe?hl=en</subscribe>
      <post>http://groups.google.com/group/utgb/post?hl=en</post>
      <archive>http://groups.google.com/group/utgb?hl=en</archive>
    </mailingList>
  </mailingLists>

  <licenses>
    <license>
      <name>Apache 2</name>
      <url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
      <distribution>repo</distribution>
    </license>
  </licenses>

  <scm>
    <connection>scm:hg:https://utgb.googlecode.com/hg/</connection>
    <developerConnection>scm:hg:default</developerConnection>
  </scm>

  <organization>
    <name>utgenome.org</name>
    <url>http://utgenome.org</url>
  </organization>

  <developers>
    <developer>
      <id>leo</id>
      <name>Taro L. Saito</name>
      <url>http://www.xerial.org</url>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Architect</role>
        <role>Developer</role>
      </roles>
      <timezone>+9</timezone>
    </developer>
    <developer>
      <id>yoshimura</id>
      <name>Jun Yoshimura</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Researcher</role>
      </roles>
      <timezone>+9</timezone>
    </developer>
    <developer>
      <id>higasa</id>
      <name>Koichiro Higasa</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Researcher</role>
        <role>Tester</role>
      </roles>
      <timezone>+9</timezone>
    </developer>
    <developer>
      <id>mino</id>
      <name>Hiroshi Minoshima</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Tester</role>
      </roles>
      <timezone>+9</timezone>
    </developer>
    <developer>
      <id>sasa_atsu</id>
      <name>Atsushi Sasaki</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Developer</role>
      </roles>
      <timezone>+9</timezone>
    </developer>
    <developer>
      <id>ahsan</id>
      <name>Budrul Ahsan</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Developer</role>
      </roles>
      <timezone>+9</timezone>
    </developer>
    <developer>
      <id>reginaldo</id>
      <name>Reginaldo Kuroshu</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Developer</role>
      </roles>
      <timezone>+9</timezone>
    </developer>
  </developers>
  <contributors>
    <contributor>
      <name>Shinichi Morishita</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Project Manager</role>
      </roles>
      <timezone>+9</timezone>
    </contributor>
    <contributor>
      <name>Shin Sasaki</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Alumni</role>
      </roles>
      <timezone>+9</timezone>
    </contributor>
    <contributor>
      <name>Yukinobu Nagayasu</name>
      <organization>University of Tokyo</organization>
      <roles>
        <role>Alumni</role>
      </roles>
      <timezone>+9</timezone>
    </contributor>
  </contributors>

  <build>
    <resources>
      <!-- this settings is requried to include sources codes to the artifact -->
      <resource>
        <directory>src/main/java</directory>
      </resource>
      <resource>
        <directory>src/main/resources</directory>
      </resource>
    </resources>
    <testResources>
      <testResource>
        <directory>src/test/java</directory>
      </testResource>
      <testResource>
        <directory>src/test/resources</directory>
      </testResource>
    </testResources>

    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-resources-plugin</artifactId>
        <version>2.4</version>
        <configuration>
          <encoding>UTF-8</encoding>
        </configuration>
      </plugin>

      <plugin>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>2.0.2</version>
        <configuration>
          <!-- Use JDK 1.5 until Java6 for Mac OS X is released -->
          <source>1.5</source>
          <target>1.5</target>
        </configuration>
      </plugin>

      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-eclipse-plugin</artifactId>
        <version>2.8</version>
        <configuration>
          <useProjectReferences>false</useProjectReferences>
          <downloadSources>true</downloadSources>
          <downloadJavadocs>true</downloadJavadocs>
        </configuration>
      </plugin>


      <!-- tag directory -->
      <plugin>
        <artifactId>maven-release-plugin</artifactId>
        <version>2.1</version>
        <configuration>
          <autoVersionSubmodules>true</autoVersionSubmodules>
          <preparationGoals>clean install</preparationGoals>
          <goals>deploy</goals>
          <connectionUrl>scm:hg:https://utgb.googlecode.com/hg/</connectionUrl>
        </configuration>
      </plugin>

      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-site-plugin</artifactId>
        <version>2.0-beta-7</version>
        <dependencies>
          <dependency>
            <groupId>org.xerial.maven</groupId>
            <artifactId>doxia-aqua</artifactId>
            <version>1.0.5</version>
          </dependency>
        </dependencies>
      </plugin>


    </plugins>


    <extensions>
      <!-- necessary for deploying artifacts via scp -->
      <extension>
        <groupId>org.apache.maven.wagon</groupId>
        <artifactId>wagon-ssh-external</artifactId>
        <version>1.0-beta-7</version>
      </extension>
      <!-- necessary for deploying artifacts via http -->
      <extension>
        <groupId>org.apache.maven.wagon</groupId>
        <artifactId>wagon-http</artifactId>
        <version>1.0-beta-7</version>
      </extension>
    </extensions>

  </build>

  <dependencies>
    <dependency>
      <groupId>org.xerial</groupId>
      <artifactId>xerial-lens</artifactId>
      <version>2.0.6</version>
    </dependency>
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.8.1</version>
      <scope>test</scope>
    </dependency>
  </dependencies>

  <!-- Java Doc -->
  <reporting>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-javadoc-plugin</artifactId>
        <version>2.7</version>
        <configuration>
          <doctitle>UTGB Toolkit ${project.version}</doctitle>
          <locale>en_US</locale>
          <!-- <stylesheetfile>${basedir}/javadoc.css</stylesheetfile> -->
          <bottom><![CDATA[<a rel="license" href="http://creativecommons.org/licenses/by-sa/2.1/jp/"><img alt="Creative Commons License" border="0" src="http://creativecommons.org/images/public/somerights20.gif" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-sa/2.1/jp/">Creative Commons Attribution-ShareAlike 2.1 Japan License</a>.<!--<rdf:RDF xmlns="http://web.resource.org/cc/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"><Work rdf:about=""><dc:date>2005</dc:date><dc:rights><Agent><dc:title>utgenome org.</dc:title></Agent></dc:rights><license rdf:resource="http://creativecommons.org/licenses/by-sa/2.1/jp/" /></Work><License rdf:about="http://creativecommons.org/licenses/by-sa/2.1/jp/"><permits rdf:resource="http://web.resource.org/cc/Reproduction" /><permits rdf:resource="http://web.resource.org/cc/Distribution" /><requires rdf:resource="http://web.resource.org/cc/Notice" /><requires rdf:resource="http://web.resource.org/cc/Attribution" /><permits rdf:resource="http://web.resource.org/cc/DerivativeWorks" /><requires rdf:resource="http://web.resource.org/cc/ShareAlike" /></License></rdf:RDF>-->]]></bottom>
        </configuration>
      </plugin>

      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-jxr-plugin</artifactId>
        <version>2.1</version>
        <configuration>
          <aggregate>true</aggregate>
        </configuration>
      </plugin>

      <!-- <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-changelog-plugin</artifactId> 
        </plugin> -->

      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-report-plugin</artifactId>
        <version>2.5</version>
        <configuration>
          <aggregate>true</aggregate>
        </configuration>
      </plugin>
    </plugins>
  </reporting>

  <repositories>
    <!-- Xerial Repository -->
    <repository>
      <id>xerial</id>
      <name>Xerial Artifact Repository</name>
      <url>http://www.xerial.org/maven/repository/artifact</url>
    </repository>
    <repository>
      <id>xerial-snapshot</id>
      <name>Xerial Artifact Repository</name>
      <url>http://www.xerial.org/maven/repository/snapshot</url>
      <snapshots>
        <enabled>true</enabled>
      </snapshots>
    </repository>
    <!-- Apache Snapshot Repository -->
    <repository>
      <id>apache.org</id>
      <name>Maven Snapshots</name>
      <url>http://people.apache.org/repo/m2-snapshot-repository</url>
      <releases>
        <enabled>false</enabled>
      </releases>
      <snapshots>
        <enabled>true</enabled>
      </snapshots>
    </repository>

    <!-- UTGB Repository -->
    <repository>
      <id>utgb</id>
      <name>UTGB Artifact Repository</name>
      <url>http://maven.utgenome.org/repository/artifact</url>
    </repository>
    <repository>
      <id>utgb-snapshot</id>
      <name>UTGB SNAPSHOT Repository</name>
      <url>http://maven.utgenome.org/repository/snapshot</url>
      <snapshots>
        <enabled>true</enabled>
      </snapshots>
    </repository>

  </repositories>


  <pluginRepositories>
    <pluginRepository>
      <id>xerial</id>
      <name>Xerial Artifact Repository</name>
      <url>http://www.xerial.org/maven/repository/artifact</url>
    </pluginRepository>
    <!-- Apache Snapshot Repository -->
    <pluginRepository>
      <id>apache.org</id>
      <name>Maven Plugin Snapshots</name>
      <url>http://people.apache.org/repo/m2-snapshot-repository</url>
      <releases>
        <enabled>false</enabled>
      </releases>
      <snapshots>
        <enabled>true</enabled>
      </snapshots>
    </pluginRepository>
  </pluginRepositories>

  <distributionManagement>
    <repository>
      <id>utgb.scp</id>
      <name>UTGB Maven Repository</name>
      <url>scpexe://maven.utgenome.org/home/web/maven.utgenome.org/repository/artifact</url>
    </repository>
    <snapshotRepository>
      <id>utgb.scp</id>
      <name>UTGB Maven Snapshot Repository</name>
      <url>scpexe://maven.utgenome.org/home/web/maven.utgenome.org/repository/snapshot</url>
      <uniqueVersion>false</uniqueVersion>
    </snapshotRepository>
    <site>
      <id>utgb.scp</id>
      <url>scpexe://maven.utgenome.org/home/web/maven.utgeonme.org/repository/site/utgb</url>
    </site>
  </distributionManagement>



  <profiles>
    <profile>
      <id>hudson</id>
      <distributionManagement>
        <repository>
          <id>utgb.local</id>
          <name>UTGB Maven Repository</name>
          <url>file:///home/web/maven.utgenome.org/repository/artifact</url>
        </repository>
        <snapshotRepository>
          <id>utgb.local</id>
          <name>UTGB Maven Snapshot Repository</name>
          <url>file:///home/web/maven.utgenome.org/repository/snapshot</url>
          <uniqueVersion>false</uniqueVersion>
        </snapshotRepository>
        <site>
          <id>utgb.local</id>
          <url>file:///home/web/maven.utgenome.org/repository/site/utgb</url>
        </site>
      </distributionManagement>
    </profile>
  </profiles>

</project>