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q)(
q()
setwd('/home/ttbond/桌面/201807/JD_SSL_20180719
')
setwd('/home/ttbond/桌面/201807/JD_SSL_20180719\')
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setwd('/home/ttbond/桌面/201807/JD_SSL_20180719')
source('~/桌面/201807/JD_SSL_20180719/plot_roc_iteration.R')
library(ggplot2)
sv_type<-"DEL"
dataFile <- file(paste("ngs2",sv_type,"rcd",sep='.'),"r")
label_p=c('5','10','20','30','40','50')
x_data<-numeric()
y_data<-numeric()
type_data<-numeric()
tmp_len<-numeric()
for(ii in 1:length(label_p)){
line <- readLines(dataFile,n=1)
line <- strsplit(line,' ')
line <- unlist(line)
print(length(line))
tmp_len<-c(tmp_len,length(line))
for(i in 1:length(line)){
x_data<-c(x_data,as.numeric(line[i]))
}
line <- readLines(dataFile,n=1)
line <- strsplit(line,' ')
line <- unlist(line)
for(i in 1:length(line)){
y_data<-c(y_data,as.numeric(line[i]))
}
}
auc_data<-readLineF(dataFile)
close(dataFile)
#label_p=paste(label_p,"AUC=")
#label_p=paste(label_p,substr(line,0,6),sep='')
for(i in 1:length(tmp_len)){
type_data <- c(type_data,rep(label_p[i],tmp_len[i]))
}
x_data<-unlist(x_data)
y_data<-unlist(y_data)
type_data<-unlist(type_data)
all_data=data.frame(x_data,y_data,type_data)
all_data$type_data<-factor(all_data$type_data,levels=label_p)
bb<-ggplot()+
geom_line(data=all_data,aes(x=all_data[,1],y=all_data[,2],colour=all_data[,3]))+
xlab("FPR")+
ylab("TPR")+
labs(colour="label percentage(%)",title="ROC of deletions")+
theme(plot.title = element_text(hjust=0.5),legend.position = c(0.18,0.33),legend.key.width=unit(2,'cm'))+
scale_y_continuous(limits = c(0,1))
auc_part<-data.frame(label_p,auc_data,label_type)
label_type<-label_p
auc_part<-data.frame(label_p,auc_data,label_type)
auc_part$label_type<-factor(auc_part$label_type,levels=(label_p))
auc_part$label_p<-factor(auc_part$label_p,levels=(label_p))
bb22<-ggplot(data=auc_part,aes(x=label_p,y=auc_data,fill=label_type))+
geom_bar(stat="identity",position='dodge',width=0.7)+
coord_cartesian(ylim=c(.8,.9)) +
theme(axis.title.x=element_blank(),
axis.text.x=element_blank(),
axis.ticks.x=element_blank(),
axis.line.x=element_blank(),
legend.position = "none")+
ylab("AUC")+
scale_y_continuous(expand = c(0,0))
print(bb22)
library(viridis)
left_part<-ggdraw()+
draw_plot(bb,0,0,1,1)+
draw_plot(bb22,0.52,0.23,0.4,0.4)
library(cowplot)
left_part<-ggdraw()+
draw_plot(bb,0,0,1,1)+
draw_plot(bb22,0.52,0.23,0.4,0.4)
left_part
bb<-ggplot()+
geom_line(data=all_data,aes(x=all_data[,1],y=all_data[,2],colour=all_data[,3]))+
xlab("FPR")+
ylab("TPR")+
labs(colour="label percentage(%)",title="deletion ROC at real data")+
theme(plot.title = element_text(hjust=0.5),legend.position = c(0.18,0.33),legend.key.width=unit(2,'cm'))+
scale_y_continuous(limits = c(0,1))
label_type<-label_p
auc_part<-data.frame(label_p,auc_data,label_type)
auc_part$label_type<-factor(auc_part$label_type,levels=(label_p))
auc_part$label_p<-factor(auc_part$label_p,levels=(label_p))
bb22<-ggplot(data=auc_part,aes(x=label_p,y=auc_data,fill=label_type))+
geom_bar(stat="identity",position='dodge',width=0.7)+
coord_cartesian(ylim=c(.8,.9)) +
theme(axis.title.x=element_blank(),
axis.text.x=element_blank(),
axis.ticks.x=element_blank(),
axis.line.x=element_blank(),
legend.position = "none")+
ylab("AUC")+
scale_y_continuous(expand = c(0,0))
print(bb22)
library(viridis)
left_part<-ggdraw()+
draw_plot(bb,0,0,1,1)+
draw_plot(bb22,0.52,0.23,0.4,0.4)
left_part
all_data<-data.frame(as.numeric(p_data),auc_data,method_data)
library(ggplot2)
SV_type<-"DEL"
label_p<-c('5','10','20','30','40','50')
mlmethod<-c("label spreading","svm","randomforest")
p_data<-numeric()
auc_data<-numeric()
method_data<-numeric()
dataFile <- file(paste("ngs2.compare.",SV_type,".rcd",sep=''),"r")
for(j in 1:length(mlmethod)){
line <- readLineF(dataFile)
auc_data <- c(auc_data,line)
method_data<-c(method_data,rep(mlmethod[j],length(line)))
p_data<-c(p_data,label_p)
}
close(dataFile)
all_data<-data.frame(p_data,auc_data,method_data)
all_data$method_data<-factor(all_data$method_data,levels=(c("svm","label spreading","randomforest")))
all_data$p_data<-factor(all_data$p_data,levels=(label_p))
bb2<-ggplot(data=all_data,aes(x=p_data,y=auc_data,fill=method_data,width=0.6))+
geom_bar(stat="identity",position=position_dodge(width=0.67))+
xlab("label percentage(%)")+
ylab("AUC")+
labs(fill='',title="AUC of deletions","labeled")+
theme(plot.title = element_text(hjust=0.5),
legend.position = c(1,1),
legend.justification=c(0, 1),
legend.key.width=unit(1, "lines"),
plot.margin = unit(c(1, 8, 0.5, 0.5), "lines"))+
scale_y_continuous(expand = c(0,0),limits=c(0,1))
all_data<-data.frame(as.numeric(p_data),auc_data,method_data)
bb2<-ggplot()+
geom_line(data=all_data,aes(x=p_data,y=auc_data,colour=method_data))+
xlab("label percentage(%)")+
ylab("AUC")
print(bb2)
auc_data
method_data
p_data<-c(5,10,20,30,40,50)
all_data<-data.frame(as.numeric(p_data),auc_data,method_data)
bb2<-ggplot()+
geom_line(data=all_data,aes(x=p_data,y=auc_data,colour=method_data))+
xlab("label percentage(%)")+
ylab("AUC")
print(bb2)
all_data<-data.frame(p_data,auc_data,method_data)
bb2<-ggplot()+
geom_line(data=all_data,aes(x=p_data,y=auc_data,colour=method_data))+
xlab("label percentage(%)")+
ylab("AUC")
print(bb2)
bb2<-ggplot()+
geom_line(data=all_data,aes(x=p_data,y=auc_data,colour=method_data))+
xlab("label percentage(%)")+
ylab("AUC")+
scale_y_continuous(limits=c(5,50))
print(bb2)
bb2<-ggplot()+
geom_line(data=all_data,aes(x=p_data,y=auc_data,colour=method_data))+
xlab("label percentage(%)")+
ylab("AUC")+
scale_y_continuous(limits=c(5,50))
print(bb2)
print(bb2)
bb2<-ggplot()+
geom_line(data=all_data,aes(x=p_data,y=auc_data,colour=method_data))+
xlab("label percentage(%)")+
ylab("AUC")
print(bb2)
bb2<-ggplot()+
geom_line(data=all_data,aes(x=p_data,y=auc_data,colour=method_data))+
xlab("label percentage(%)")+
ylab("AUC")+
xlim(5,50)
print(bb2)
bb2<-ggplot()+
geom_line(data=all_data,aes(x=p_data,y=auc_data,colour=method_data))+
xlab("label percentage(%)")+
ylab("AUC")+
labs(fill='',title="AUC of deletions","labeled")+
theme(plot.title = element_text(hjust=0.5),
legend.position = c(1,1),
legend.justification=c(0, 1),
legend.key.width=unit(1, "lines"),
plot.margin = unit(c(1, 8, 0.5, 0.5), "lines"))
print(bb2)
source('~/桌面/201807/JD_SSL_20180719/plot_real_zhifang.R')