forked from Stefan-A-Hoffmann/High-throughput-CRISPR-design
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathtargets_BCP1.txt
66 lines (65 loc) · 3.63 KB
/
targets_BCP1.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
# [ CRISPRdirect | 2021-10-08 05:05:46 ]
# sequence_name:
# pam_sequence: NGG
# specificity_check: Budding yeast (Saccharomyces cerevisiae) S288C genome, sacCer3 (Apr, 2011)
# start end strand sequence GC Tm TTTT RE_sites hit_20mer hit_12mer hit_8mer
#
17 39 + AATTAAATGATTTAAAAAATAGG 5.00 44.77 0 DraI 1 2 84
33 55 + AAATAGGAAGAGAAAAAATGTGG 25.00 57.41 0 1 1 105
36 58 + TAGGAAGAGAAAAAATGTGGAGG 35.00 63.79 0 1 1 70
46 68 + AAAAATGTGGAGGAAGAAAATGG 30.00 62.27 0 1 1 160
101 123 - CCGATTCAGAAAATGAAGAAGAG 30.00 59.83 1 1 2 47
109 131 + GAAAATGAAGAAGAGCAAAATGG 30.00 60.40 0 1 2 36
148 170 + AATATTGACTTCGATTTTTTCGG 20.00 55.02 1 SspI 1 1 81
151 173 + ATTGACTTCGATTTTTTCGGTGG 35.00 62.20 1 1 1 22
177 199 - CCCAGAAGTTGATTTTCATGCTT 30.00 62.22 0 1 2 47
178 200 - CCAGAAGTTGATTTTCATGCTTT 30.00 60.73 0 1 2 28
205 227 + AATTTACTGCGTCAGTTATTTGG 30.00 62.50 0 1 1 17
224 246 + TTGGTCCTCAAGAAAGTACCAGG 45.00 69.93 0 SmlI 1 1 22
229 251 - CCTCAAGAAAGTACCAGGATTCA 40.00 66.61 0 SmlI 1 1 42
242 264 - CCAGGATTCAACTAAGCAGCTTG 45.00 68.92 0 1 1 21
243 265 + CAGGATTCAACTAAGCAGCTTGG 45.00 70.35 0 1 1 23
259 281 + AGCTTGGCAGATTTGATCCTAGG 45.00 71.76 0 AvrII 1 1 19
276 298 - CCTAGGTTCCCCAACCACCACAA 55.00 77.26 0 AvrII 1 1 6
284 306 - CCCCAACCACCACAATTAAAACA 35.00 64.09 1 1 1 28
285 307 - CCCAACCACCACAATTAAAACAG 35.00 64.39 1 1 1 48
286 308 - CCAACCACCACAATTAAAACAGA 35.00 65.70 1 1 1 39
289 311 + ACCACCACAATTAAAACAGACGG 35.00 65.70 0 1 1 85
290 312 - CCACCACAATTAAAACAGACGGC 45.00 68.53 1 1 1 27
293 315 - CCACAATTAAAACAGACGGCAAA 35.00 63.55 1 1 1 48
325 347 - CCATACTGTTTTCTTTCATTCGT 30.00 61.30 0 1 1 21
378 400 + TGTCAAATATTTACAAAAAGTGG 20.00 53.94 0 SspI 1 2 60
413 435 - CCACTTTCTTCAAAACTATGATT 25.00 57.09 1 1 1 69
421 443 + TTCAAAACTATGATTGATAGTGG 25.00 57.23 0 1 1 34
441 463 + TGGTAATAAAAATTGTGCTTTGG 25.00 60.12 0 1 1 24
455 477 + GTGCTTTGGTTCTCAGTGAAAGG 45.00 69.25 0 1 1 20
474 496 + AAGGCTGATTAATATGCCACCGG 40.00 68.57 0 AseI 1 1 10
490 512 - CCACCGGAAGTCGTTCCACCTTT 55.00 74.59 0 1 1 10
493 515 - CCGGAAGTCGTTCCACCTTTATA 40.00 66.72 0 1 1 11
505 527 - CCACCTTTATACAAGATTACGTT 30.00 60.87 0 1 1 21
507 529 + ACCTTTATACAAGATTACGTTGG 30.00 62.75 0 1 1 22
508 530 - CCTTTATACAAGATTACGTTGGA 30.00 62.10 0 1 1 45
510 532 + TTTATACAAGATTACGTTGGAGG 30.00 60.62 0 1 1 8
522 544 + TACGTTGGAGGATGTTGCCACGG 50.00 73.54 0 BtgI 1 1 29
529 551 + GAGGATGTTGCCACGGCACTTGG 60.00 77.85 0 BtgI 1 1 8
539 561 - CCACGGCACTTGGCGATGACAAA 55.00 74.32 0 BtgI 1 1 6
569 591 + ACTTCTATATCATCGTCACCAGG 40.00 66.42 0 1 1 9
587 609 - CCAGGAAGTATGAAGTAAATTTT 25.00 58.16 0 ApoI 1 1 11
613 635 + ACTGACGATGATACCGACTCTGG 50.00 70.83 0 1 1 5
620 642 + ATGATACCGACTCTGGTAAGAGG 45.00 69.50 0 1 1 14
626 648 - CCGACTCTGGTAAGAGGAATAAA 35.00 65.83 0 1 1 9
653 675 + AAGACGAAAGATCCAAAAAAAGG 30.00 61.26 0 1 1 72
654 676 + AGACGAAAGATCCAAAAAAAGGG 30.00 61.26 0 1 1 136
660 682 + AAGATCCAAAAAAAGGGTGAAGG 35.00 65.57 0 1 1 20
665 687 - CCAAAAAAAGGGTGAAGGCCGAT 45.00 72.01 1 1 2 55
683 705 - CCGATGAAGTAGACTACTTTCAT 30.00 62.40 0 AccI 1 1 30
687 709 + TGAAGTAGACTACTTTCATGAGG 35.00 63.35 0 AccI,BspHI 1 1 20
690 712 + AGTAGACTACTTTCATGAGGAGG 40.00 66.88 0 AccI,BspHI 1 1 18
714 736 - CCGATTTTTTGAAAAATATGCCA 20.00 56.43 1 1 1 89
734 756 - CCAAGATTCACTTCGAATCAGAA 35.00 63.62 0 BstBI 1 1 11
744 766 + CTTCGAATCAGAAGCTAAAAAGG 35.00 62.87 0 BstBI 1 1 35
745 767 + TTCGAATCAGAAGCTAAAAAGGG 30.00 61.38 0 BstBI 1 1 45
781 803 + TACATGATTCTTGATCACGAAGG 35.00 63.71 0 BclI 1 1 13
804 826 - CCTTGTCAAAAGTATCGATGAAT 30.00 61.20 1 ClaI 1 1 37
807 829 + TGTCAAAAGTATCGATGAATTGG 30.00 61.20 0 ClaI 1 1 17
827 849 + TGGAAACAGAAATTTCCACTTGG 35.00 65.17 0 ApoI 1 1 28