-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathFileProcessorImpl.py
1345 lines (853 loc) · 54.4 KB
/
FileProcessorImpl.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
# -*- coding: utf-8 -*-
import os
import re
import glob
from os import listdir
from os.path import isfile, join, isdir
from swissbibUtilities import SwissbibUtilities, ErrorHashProcesing, ResultCollector, ErrorMongoProcessing, AdministrationOperation, ProcessSingleNebisRecord
from pyexpat import ExpatError
from swissbibHash import HashNebisMarcContent
from datetime import datetime, timedelta
from Context import ApplicationContext,HarvestingWriteContext,FileWebdavWriteContext,WriteContext,FilePushWriteContext
from swissbibPreImportProcessor import SwissbibPreImportProcessor
from harvestingTasks import PersistRecordMongo
from Context import StoreNativeRecordContext, TaskContext
import inspect
import time
import smtplib
__author__ = 'swissbib'
class FileProcessor(SwissbibPreImportProcessor):
def __init__(self,context):
SwissbibPreImportProcessor.__init__(self,context)
def lookUpContent(self):
pass
def preProcessContent(self):
pass
def process(self):
pass
def postProcessContent(self):
numberProcessedRecords = self.context.getResultCollector().getIncrementProcessedRecordNoFurtherDetails()
maxDocuments = self.context.getConfiguration().getMaxDocuments()
blocked = self.context.getConfiguration().getBlocked()
#in case the configuration is set to blocked a
if (not maxDocuments is None and not numberProcessedRecords is None
and int(numberProcessedRecords) > int(maxDocuments)) \
or blocked:
archivedFiles = self.context.getResultCollector().getCollectedArchiveFiles()
if not archivedFiles is None and len(archivedFiles) > 0:
for filename in archivedFiles.keys():
os.system("unlink " + self.context.getConfiguration().getResultDir() + os.sep + filename)
os.system("mv " + archivedFiles[filename] + os.sep + filename + " " + self.context.getConfiguration().getArchiveNotSent())
self.context.getConfiguration().setBlocked('true')
SwissbibUtilities.sendNotificationMail(receivers=self.context.getConfiguration().getEMailNotifification(),
network=self.context.getConfiguration().getNetworkPrefix(),
numberDocuments=numberProcessedRecords,
mailserver=self.context.getConfiguration().getMailServer())
#sollte protected sein -> dafuer muss ich jedoch Module einrichten
def processFileContent(self,inputResourceContext):
pass
def initialize(self):
pass
def transformRecordNamespace(self,contentSingleRecord):
#ich muss hier eine Fehlerbehandlung einbauen, wenn die Transformation nicht funktioniert!
#at the moment only Primo records have to be transformed into a namespace, which can be processed by later systems in the chain
#for our cases it's CBS
#das muss besser getestet werden
return SwissbibPreImportProcessor.transformRecordNamespace(self,contentSingleRecord)
def _processFileContent(self,inputResourceContext):
try:
for contentSingleRecord in inputResourceContext.createGenerator():
try:
recordId = self.getRecordId(contentSingleRecord)
except Exception as pythonBaseException:
self._writeErrorMessages(self.context.getWriteContext(),pythonBaseException,"Exception afters searching recordID " +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
continue
recordDeleted = self.isDeleteRecord(contentSingleRecord)
if recordDeleted:
contentSingleRecord = self.prepareDeleteRecord(contentSingleRecord)
else:
try:
contentSingleRecord = self.transformRecordNamespace(contentSingleRecord)
except Exception as transformException:
self._writeErrorMessages(self.context.getWriteContext(),transformException,"Exception while transforming the namespace of the single record \n"
+ contentSingleRecord + "\n" +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
continue
#substituteChars = self.context.getConfiguration().getSubstituteCharacters()
#if not substituteChars is None:
# contentSingleRecord = re.sub(substituteChars," ",contentSingleRecord)
try:
self.parseWellFormed(contentSingleRecord)
except ExpatError as expatInst:
self.context.getResultCollector().addRecordsparseError(1)
self._writeErrorMessages(self.context.getWriteContext(),expatInst,"Exception after parsing record for well formed format \n"
+ contentSingleRecord + "\n" +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
continue
if self.context.getConfiguration().isSkipRecords():
self._processSkipRecord(contentSingleRecord)
else:
self.context.getResultCollector().addRecordsToCBSNoSkip(1)
self.context.getWriteContext().writeItem(contentSingleRecord)
self.context.getResultCollector().setIncrementProcessedRecordNoFurtherDetails()
for taskName,task in self.context.getConfiguration().getDedicatedTasks().items():
try:
if isinstance(task,PersistRecordMongo):
taskContext = StoreNativeRecordContext(appContext=self.context,
rID=recordId,singleRecord=contentSingleRecord,
deleted=recordDeleted)
else:
taskContext = TaskContext(appContext=self.context)
task.processRecord(taskContext)
except Exception as pythonBaseException:
self._writeErrorMessages(self.context.getWriteContext(),pythonBaseException,"Exception while processing task\n"
+ contentSingleRecord + "\n" +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
continue
except Exception as pythonBaseException:
self._writeErrorMessages(self.context.getWriteContext(),pythonBaseException,"Exception in _processFileContent which could not be caught \n" +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
raise pythonBaseException
def _writeErrorMessages(self,writeContext, exceptionType, exceptionName):
if not writeContext is None:
writeContext.writeErrorLog(header=exceptionName,message=[str(exceptionType)])
else:
print "no WriteContext after Error: " + exceptionName + " Handler\n"
print "redirect error message to stdout\n"
print str(exceptionType) + "\n"
class FilePushProcessor(FileProcessor):
def __init__(self,context):
FileProcessor.__init__(self, context)
#Todo: pruefe ob die configuration vom Typ Nebis config ist
self.newFileTemplate = re.compile('(.*?)\.' + self.context.getConfiguration().getFileNameSuffix(),re.UNICODE | re.DOTALL | re.IGNORECASE)
def initialize(self):
if not os.path.isdir(self.context.getConfiguration().getIncomingDir()):
os.system("mkdir -p " + self.context.getConfiguration().getIncomingDir())
if not os.path.isdir(self.context.getConfiguration().getClusteringDir()):
os.system("mkdir -p " + self.context.getConfiguration().getClusteringDir())
else:
os.system("rm -r " + self.context.getConfiguration().getClusteringDir())
os.system("mkdir -p " + self.context.getConfiguration().getClusteringDir())
if not os.path.isdir(self.context.getConfiguration().getNebisWorking()):
os.system("mkdir -p " + self.context.getConfiguration().getNebisWorking())
else:
os.system("rm -r " + self.context.getConfiguration().getNebisWorking())
os.system("mkdir -p " + self.context.getConfiguration().getNebisWorking())
if not os.path.isdir(self.context.getConfiguration().getCollectedDir()):
os.system("mkdir -p " + self.context.getConfiguration().getCollectedDir())
else:
os.system("rm -r " + self.context.getConfiguration().getCollectedDir())
os.system("mkdir -p " + self.context.getConfiguration().getCollectedDir())
if not os.path.isdir(self.context.getConfiguration().getNebisSrcDir()):
os.system("mkdir -p " + self.context.getConfiguration().getNebisSrcDir())
SwissbibPreImportProcessor.initialize(self)
def prepareDeleteRecord(self,recordToDelete):
#nebis redords marked as deleted contain still a metadata section with a lot of rubbish we can throw away
#look for an example in: notizen/examples.oai/aleph.nebis/nebis.deleted.indent.xml
spNebisDeletedRecordsToSubstitutePattern = self.pNebisDeleteRecord.search(recordToDelete)
if spNebisDeletedRecordsToSubstitutePattern:
toReturn= spNebisDeletedRecordsToSubstitutePattern.group(1) + spNebisDeletedRecordsToSubstitutePattern.group(2)
else:
#todo: write a message
toReturn = recordToDelete
return toReturn
def lookUpContent(self):
os.chdir(self.context.getConfiguration().getIncomingDir())
for fileName in os.popen('find . -mmin +2 -name "*.tar.gz"') :
#remove carriage return characters from file name
orgFileName = fileName[:-1]
os.system("mv " + orgFileName + " " + self.context.getConfiguration().getNebisWorking())
#onlyFile = os.path.basename(orgFileName)
def process(self):
os.chdir(self.context.getConfiguration().getNebisWorking())
#for fileName in os.popen('dir *' + self.harvestingNebisConfigs.getFileNameSuffix()) :
#it's really important to process the files in sorted alphabetic order!
#otherwise we store the history of records in the wrong order in our datastore
#-> not the really last version of a record is stored and the datastore is used to create the initial CBS database
#sorted(glob.glob('*' + self.context.getConfiguration().getFileNameSuffix()), key=os.path.getmtime) // sort by time
#sorted(glob.glob('*' + self.context.getConfiguration().getFileNameSuffix()), key=os.path.getsize) // sort by size
for fileName in sorted(glob.glob('*' + self.context.getConfiguration().getFileNameSuffix())):
#change filename
#aleph.PRIMO-FULL.20120323.121009.1.tar.gz -> nebis-20120323.121009.1.xml(.gz)
tfileName = re.sub("aleph\.PRIMO-FULL\.","nebis-",fileName)
compoundOutputFile = self.newFileTemplate.search(tfileName).group(1) + ".xml"
os.system("cp " + fileName + " " + self.context.getConfiguration().getClusteringDir())
try:
wC = FilePushWriteContext(self.context)
wC.setOutFileName(self.context.getConfiguration().getCollectedDir() + os.sep + compoundOutputFile)
self.context.setWriteContext(wC)
sfC = PushFileProvider(self.context)
sfC.setFileName(fileName)
self.processFileContent(sfC)
wC.closeWriteContext()
self.context.getResultCollector().addProcessedFile(fileName)
os.chdir(self.context.getConfiguration().getNebisWorking())
os.system("mv " + fileName + " " + self.context.getConfiguration().getNebisSrcDir())
except Exception as pythonBasicException:
#die alephfiles sollen nochmals verarbeitet werden
os.chdir(self.context.getConfiguration().getNebisWorking())
os.system("mv *.gz " + self.context.getConfiguration().getIncomingDir())
raise pythonBasicException
finally:
#cleanup the cluster directory for the next file which has to be processed
os.system("rm -r " + self.context.getConfiguration().getClusteringDir())
os.system("mkdir -p " + self.context.getConfiguration().getClusteringDir())
def processFileContent(self,inputResourceContext):
self._processFileContent(inputResourceContext)
def _processSkipRecord(self,inputResourceContext):
raise Exception("FilePushProcessor doesn't implement skipRecord Functionality at the moment")
class FileWebDavProcessor(FileProcessor):
def __init__(self,context):
FileProcessor.__init__(self,context)
self.pReroDeleteRecord = re.compile("(<record>.*?</header>).*",re.UNICODE | re.DOTALL | re.IGNORECASE)
self.pIncomingPattern = re.compile("(.*?)##(.*?)##$")
self.pIncomingPatternFromUntil = re.compile("^(.*?)UNTIL(.*?)$")
self.pStoreProcPattern = re.compile("^LATEST_PROCESSING$",re.UNICODE | re.DOTALL | re.IGNORECASE)
def initialize(self):
if not os.path.isdir(self.context.getConfiguration().getReroWorkingDir()):
os.system("mkdir -p " + self.context.getConfiguration().getReroWorkingDir())
else:
os.system("rm -r " + self.context.getConfiguration().getReroWorkingDir())
os.system("mkdir -p " + self.context.getConfiguration().getReroWorkingDir())
if not os.path.isdir(self.context.getConfiguration().getDumpDir()):
os.system("mkdir -p " + self.context.getConfiguration().getDumpDir())
else:
os.system("rm -r " + self.context.getConfiguration().getDumpDir())
os.system("mkdir -p " + self.context.getConfiguration().getDumpDir())
if not os.path.isdir(self.context.getConfiguration().getDumpDirSkipped()):
os.system("mkdir -p " + self.context.getConfiguration().getDumpDirSkipped())
else:
os.system("rm -r " + self.context.getConfiguration().getDumpDirSkipped())
os.system("mkdir -p " + self.context.getConfiguration().getDumpDirSkipped())
if not os.path.isdir(self.context.getConfiguration().getArchiveDir()):
os.system("mkdir -p " + self.context.getConfiguration().getArchiveDir())
if not os.path.isdir(self.context.getConfiguration().getResultDir()):
os.system("mkdir -p " + self.context.getConfiguration().getResultDir())
if not os.path.isdir(self.context.getConfiguration().getErrorLogDir()):
os.system("mkdir -p " + self.context.getConfiguration().getErrorLogDir())
if not os.path.isdir(self.context.getConfiguration().getProcessLogDir()):
os.system("mkdir -p " + self.context.getConfiguration().getProcessLogDir())
if not os.path.isdir(self.context.getConfiguration().getReroSrcDir()):
os.system("mkdir -p " + self.context.getConfiguration().getReroSrcDir())
def lookUpContent(self):
inDirConfigured = self.context.getConfiguration().getIncomingDir()
print "configured directory: " + inDirConfigured + "\n"
mStoreLatestProc = self.pStoreProcPattern.search(inDirConfigured)
# first) we are searchin g for the pattern which indicates: the last day processed is stored in a file
#-> I guess this will be the norml case
if mStoreLatestProc:
#fileLatestProcessing = self.context.getConfiguration().getStoreLatestProc()
#tfile = open(fileLatestProcessing,"r")
#sDateLastProc = tfile.read()
#tfile.close()
sDateLastProc = self.context.getConfiguration().getStoreLatestProc().strip()
#newFile.flush()
#pythonDate = datetime.strptime(datum,"%d/%b/%Y")
#pythonDateShort = datetime.strptime(pythonDate,"%Y-%m-%d")
dateProc = datetime.strptime(sDateLastProc,"%Y_%m_%d")
dateProc = dateProc + timedelta(days=1)
#dateProc += dateProc.timedelta(days=1)
stringCurrentDate = datetime.now().strftime("%Y_%m_%d")
stringDateProc = dateProc.strftime("%Y_%m_%d")
dirsNoTAvailable = []
while (stringDateProc <= stringCurrentDate):
inDir = self.context.getConfiguration().getBasedirwebdav() + os.sep + stringDateProc
print "looking for files in dir: " + inDir
try:
fileList = []
for fname in sorted(os.listdir(inDir)):
fileList.append(fname)
self._createLocalFile(inDir,fileList)
#now store the subdirectory where we have found content. This directory plus 1 day will be the starting point for the next job
self.context.getConfiguration().setStoreLatestProc(stringDateProc)
except Exception as pythonBasicException:
dirsNoTAvailable.append(stringDateProc)
#write exception
#to raise an exception isn't necessary in this moment because files are not available
#todo: more testing and experience is necessary
self._writeErrorMessages(self.context.getWriteContext(),pythonBasicException,"Exception while searching for files in incoming directory " +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
finally:
#now write the subdir - name of Basedirwebdav we tried to read content files
#this will be the starting point plus 1 day for the next process
#It might happen that the script starts during the day but the content for this day has not been filed so far
#if this happens the next starting point for the script should be today - 1 day so we have another chance not to miss the content for the current
#if (stringDateProc != stringCurrentDate) or (stringDateProc == stringCurrentDate and stringCurrentDate not in dirsNoTAvailable) :
# self.context.getConfiguration().setStoreLatestProc(stringDateProc)
#else:
# dateYesterday = (datetime.now() + timedelta(days=-1)).strftime("%Y_%m_%d")
# self.context.getConfiguration().setStoreLatestProc(dateYesterday)
#tfile = open(fileLatestProcessing,"w")
#tfile.write(stringDateProc)
#tfile.flush()
#tfile.close()
#we don't need this because we just store the name of the last subdir processed
pass
dateProc = datetime.strptime(stringDateProc,"%Y_%m_%d")
dateProc = dateProc + timedelta(days=1)
stringDateProc = dateProc.strftime("%Y_%m_%d")
else:
# first hasn't matched
mIncomingPattern = self.pIncomingPattern.search(inDirConfigured)
if mIncomingPattern:
baseDir = mIncomingPattern.group(1)
dayPattern = mIncomingPattern.group(2)
if dayPattern == "0":
inDir = baseDir + '{:%Y_%m_%d}'.format(datetime.now() )
# we are looking for a directory with current day
print "looking for files in dir: " + inDir
try:
fileList = []
for fname in sorted(os.listdir(inDir)):
fileList.append(fname)
self._createLocalFile(inDir,fileList)
except Exception as pythonBasicException:
#write exception
#to raise an exception isn't necessary in this moment because files are not available
#todo: more testing and experience is necessary
self._writeErrorMessages(self.context.getWriteContext(),pythonBasicException,"Exception while searching for files in incoming directory " +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
#print str(pythonBasicException)
else:
mUntilPattern = self.pIncomingPatternFromUntil.search(dayPattern)
if mUntilPattern:
print "looking for files with from - until pattern for directories \n"
#there is from - until range in the past
#like ##-5UNTIL-3##
#attention: first value has to be smaller
fromDate = mUntilPattern.group(1)
untilDate = mUntilPattern.group(2)
iFromDate = int(fromDate)
iUntilDate = int(untilDate)
while iFromDate <= iUntilDate:
dateDir = datetime(datetime.today().year,datetime.today().month,datetime.today().day) + timedelta(iFromDate)
inDir = baseDir + '{:%Y_%m_%d}'.format(dateDir)
print "looking for files in directory: " + inDir + "\n"
try:
fileList = []
for fname in sorted(os.listdir(inDir)):
fileList.append(fname)
self._createLocalFile(inDir,fileList)
except Exception as pythonBasicException:
#write exception
#print str(pythonBasicException)
self._writeErrorMessages(self.context.getWriteContext(),pythonBasicException,"Exception while searching for files with from until mode " +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
finally:
iFromDate += 1
else:
#there is only a single date in the past
#like ##-5##
tDate = datetime(datetime.today().year,datetime.today().month,datetime.today().day) + timedelta(int(dayPattern))
inDir = baseDir + '{:%Y_%m_%d}'.format(tDate)
print "looking for files in directory: " + inDir + "\n"
try:
fileList = []
for fname in sorted(os.listdir(inDir)):
fileList.append(fname)
self._createLocalFile(inDir,fileList)
except Exception as pythonBasicException:
#write exception
#print str(pythonBasicException)
self._writeErrorMessages(self.context.getWriteContext(),pythonBasicException,"Exception while searching for files in the past mode " +
os.path.basename(__file__) + " line + " + str(inspect.currentframe().f_back.f_lineno))
else:
#we assume it is a single directory
try:
inDir = self.context.getConfiguration().getIncomingDir()
print "looking for files in incoming directory with no date: " + inDir + "\n"
fileList = []
for fname in sorted(os.listdir(inDir)):
fileList.append(fname)
self._createLocalFile(inDir,fileList)
except Exception as pythonBasicException:
#write exception
print str(pythonBasicException)
def _createLocalFile(self,inDir, fileList):
#we have to ensure files with deletes are always processed after updates!
pDeletePattern = re.compile("delete",re.UNICODE | re.DOTALL)
fileWithDelets = []
fileNoDeletes = []
for fname in fileList:
bFileWithDelets = pDeletePattern.search(fname)
if bFileWithDelets:
fileWithDelets.append(fname)
else:
fileNoDeletes.append(fname)
for fname in fileNoDeletes:
newFileName = "".join(['{:%Y%m%d%H%M%S}'.format(datetime.now()),"-",fname])
os.system("cp " + inDir + os.sep + fname + " " + self.context.getConfiguration().getReroWorkingDir() + os.sep + newFileName )
os.system("gunzip " + self.context.getConfiguration().getReroWorkingDir() + os.sep + newFileName)
time.sleep(5)
for fname in fileWithDelets:
newFileName = "".join(['{:%Y%m%d%H%M%S}'.format(datetime.now()),"-",fname])
os.system("cp " + inDir + os.sep + fname + " " + self.context.getConfiguration().getReroWorkingDir() + os.sep + newFileName )
os.system("gunzip " + self.context.getConfiguration().getReroWorkingDir() + os.sep + newFileName)
time.sleep(5)
def process(self):
try:
for fname in sorted(os.listdir(self.context.getConfiguration().getReroWorkingDir())):
compoundOutputFileName = "".join([str(self.context.getConfiguration().getPrefixSummaryFile()),"-",fname])
wC = FileWebdavWriteContext(self.context)
self.context.setWriteContext(wC)
wC.setOutFileName(compoundOutputFileName)
sfC = WebDavFileProvider(self.context, fname)
self.processFileContent(sfC)
self.context.getResultCollector().addProcessedFile(compoundOutputFileName)
wC.closeWriteContext()
except Exception as pythonBasicException:
raise pythonBasicException
def processFileContent(self,inputResourceContext):
self._processFileContent(inputResourceContext)
def _processSkipRecord(self,inputResourceContext):
raise Exception("FileWebDavProcessor doesn't implement skipRecord Functionality at the moment")
def postProcessContent(self):
os.chdir(self.context.getConfiguration().getReroWorkingDir())
for fname in glob.glob('*.xml'):
os.system("mv " + fname + " " +
self.context.getConfiguration().getReroSrcDir())
os.chdir(self.context.getConfiguration().getReroSrcDir() )
for fname in glob.glob('*.xml'):
os.system("gzip " + fname )
#check the complete number of processed records
numberProcessedRecords = self.context.getResultCollector().getIncrementProcessedRecordNoFurtherDetails()
maxDocuments = self.context.getConfiguration().getMaxDocuments()
blocked = self.context.getConfiguration().getBlocked()
#in case the configuration is set to blocked a
if (not maxDocuments is None and not numberProcessedRecords is None
and int(numberProcessedRecords) > int(maxDocuments)) \
or blocked:
archivedFiles = self.context.getResultCollector().getCollectedArchiveFiles()
if not archivedFiles is None and len(archivedFiles) > 0:
for filename in archivedFiles.keys():
os.system("unlink " + self.context.getConfiguration().getResultDir() + os.sep + filename)
os.system("mv " + archivedFiles[filename] + os.sep + filename + " " + self.context.getConfiguration().getArchiveNotSent())
self.context.getConfiguration().setBlocked('true')
SwissbibUtilities.sendNotificationMail(receivers=self.context.getConfiguration().getEMailNotifification(),
network=self.context.getConfiguration().getNetworkPrefix(),
numberDocuments=numberProcessedRecords,
mailserver=self.context.getConfiguration().getMailServer())
def _createCompoundFileName(self, rawFileName):
compoundOutputFileName = None
#example for update file name: rero_primo_20130714_240_update_standard_0001.xml.gz
pFilePattern = re.compile("rero_primo(_.*?_)update_(.*$)",re.UNICODE | re.DOTALL)
searchedName = pFilePattern.search(rawFileName)
if searchedName:
#pfilename rero_primo_20130313_1_update_0238.xml
#cbs expects a hyphen
compoundOutputFileName = "".join([str(self.context.getConfiguration().getPrefixSummaryFile()),
"-",
'{:%Y%m%d%H%M%S}'.format(datetime.now()),
'_update',
searchedName.group(1),
searchedName.group(2)
])
if compoundOutputFileName is None:
#example for delte masked: rero_primo_20130714_240_delete_masked_object_0001.xml.gz
pFilePattern = re.compile("rero_primo(_.*?_)delete_masked_object_(.*$)",re.UNICODE | re.DOTALL)
searchedName = pFilePattern.search(rawFileName)
if searchedName:
#pfilename rero_primo_20130313_1_update_0238.xml
#cbs expects a hyphen
compoundOutputFileName = "".join([str(self.context.getConfiguration().getPrefixSummaryFile()),
"-",
'{:%Y%m%d%H%M%S}'.format(datetime.now()),
'_delete_masked',
searchedName.group(1),
searchedName.group(2)
])
if compoundOutputFileName is None:
#example for delete standard: rero_primo_20130714_240_delete_standard_0001.xml.gz
pFilePattern = re.compile("rero_primo(_.*?_)delete_standard_(.*$)",re.UNICODE | re.DOTALL)
searchedName = pFilePattern.search(rawFileName)
if searchedName:
#pfilename rero_primo_20130313_1_update_0238.xml
#cbs expects a hyphen
compoundOutputFileName = "".join([str(self.context.getConfiguration().getPrefixSummaryFile()),
"-",
'{:%Y%m%d%H%M%S}'.format(datetime.now()),
'_delete_standard',
searchedName.group(1),
searchedName.group(2)
])
if compoundOutputFileName is None:
compoundOutputFileName = self.context.getConfiguration().getPrefixSummaryFile() + "-" + rawFileName
return compoundOutputFileName
def prepareDeleteRecord(self,recordToDelete):
#nebis redords marked as deleted contain still a metadata section with a lot of rubbish we can throw away
#look for an example in: notizen/examples.oai/aleph.nebis/nebis.deleted.indent.xml
spReroDeletedRecordsToSubstitutePattern = self.pReroDeleteRecord.search(recordToDelete)
if spReroDeletedRecordsToSubstitutePattern:
toReturn= spReroDeletedRecordsToSubstitutePattern.group(1) + "</record>"
else:
#todo: write a message
toReturn = recordToDelete
return toReturn
class SingleImportFileProvider:
def __init__(self,context):
self.context = context
def setFileName(self,fileName):
self.fileName = fileName
def getFileName(self):
return self.fileName
def createGenerator(self):
emptyList = range(0)
for i in emptyList:
yield i
class PushFileProvider(SingleImportFileProvider):
def __init__(self,context):
SingleImportFileProvider.__init__(self,context)
self.pCompleteNebisRecord = re.compile('<ListRecords>(.*?)</ListRecords>',re.UNICODE | re.DOTALL)
def setFileName(self,fileName):
self.fileName = fileName
def getFileName(self):
return self.fileName
def createGenerator(self):
if self.fileName is None or len(self.fileName) == 0:
yield SingleImportFileProvider.createGenerator(self)
else:
cPath = os.getcwd()
os.chdir(self.context.getConfiguration().getClusteringDir())
os.system("tar zxf " + " " + self.fileName)
os.system("rm " + " " + self.fileName)
os.chdir(cPath)
for singleFile in glob.glob(self.context.getConfiguration().getClusteringDir() + os.sep + '*.xml'):
tfile = open(singleFile,"r")
contentSingleFile = "".join(tfile.readlines())
nebisCompleteRecord = self.pCompleteNebisRecord.search(contentSingleFile)
tfile.close()
os.system("rm " + " " + singleFile)
if nebisCompleteRecord:
yield nebisCompleteRecord.group(1)
else:
raise Exception("push generator pattern didn't match the file in process")
class BischFileProvider(SingleImportFileProvider):
def __init__(self,context):
SingleImportFileProvider.__init__(self,context)
self.pCompleteBischRecord = re.compile('<record id=.*?>.*?</record>',re.UNICODE | re.DOTALL)
def createGenerator(self):
if self.fileName is None or len(self.fileName) == 0:
#provide no content
yield SingleImportFileProvider.createGenerator(self)
else:
for singleFile in glob.glob(self.context.getConfiguration().getIncomingDir() + os.sep + '*.xml'):
tfile = open( singleFile,"r")
contentSingleFile = "".join(tfile.readlines())
tfile.close()
iterator = self.pCompleteBischRecord.finditer(contentSingleFile)
numberOfRecords = 0
for matchRecord in iterator:
contentSingleRecord = matchRecord.group()
numberOfRecords += 1
yield contentSingleRecord
if numberOfRecords == 0:
raise Exception("bisch record generator didn't match any record")
class WebDavFileProvider(SingleImportFileProvider):
def __init__(self,context,inputFileName):
SingleImportFileProvider.__init__(self,context)
#self.pIterSingleRecord = re.compile('<record><header .*?>.*?</metadata></record>',re.UNICODE | re.DOTALL | re.IGNORECASE | re.MULTILINE)
self.pIterSingleRecord = re.compile('<record><header.*?>.*?</metadata></record>',re.UNICODE | re.DOTALL | re.IGNORECASE)
self.inputFileName = inputFileName
def setFileName(self,fileName):
self.fileName = fileName
def getFileName(self):
return self.fileName
def createGenerator(self):
workingDir = self.context.getConfiguration().getReroWorkingDir()
tfile = open(workingDir + os.sep + self.inputFileName ,"r")
contentSingleFile = "".join(tfile.readlines())
tfile.close()
iterator = self.pIterSingleRecord.finditer(contentSingleFile)
numberOfRecords = 0
for matchRecord in iterator:
contentSingleRecord = matchRecord.group()
numberOfRecords += 1
yield contentSingleRecord
if numberOfRecords == 0:
raise Exception("WebdavGeerator didn't match any record")
class SummonFileProcessor(FilePushProcessor):
def __init__(self, context):
FilePushProcessor.__init__(self, context)
def initialize(self):
SwissbibPreImportProcessor.initialize(self)
if not os.path.isdir(self.context.getConfiguration().getIncomingDir()):
os.system("mkdir -p " + self.context.getConfiguration().getIncomingDir())
#inconsistent naming for variables
if not os.path.isdir(self.context.getConfiguration().getNebisWorking()):
os.system("mkdir -p " + self.context.getConfiguration().getNebisWorking())
else:
os.system("rm -r " + self.context.getConfiguration().getNebisWorking())
os.system("mkdir -p " + self.context.getConfiguration().getNebisWorking())
if not os.path.isdir(self.context.getConfiguration().getDumpDir()):
os.system("mkdir -p " + self.context.getConfiguration().getDumpDir())
else:
os.system("rm -r " + self.context.getConfiguration().getDumpDir())
os.system("mkdir -p " + self.context.getConfiguration().getDumpDir())
if not os.path.isdir(self.context.getConfiguration().getNebisSrcDir()):
os.system("mkdir -p " + self.context.getConfiguration().getNebisSrcDir())
def lookUpContent(self):
os.chdir(self.context.getConfiguration().getIncomingDir())
fileRegex = '"' + self.context.getConfiguration().getNetworkPrefix() + '-*' + '"' #\
#'*' + self.context.getConfiguration().getFileNameSuffix() + '"'
#for fileName in os.popen('find . -mmin +2 -name ' + fileRegex):
for fileName in os.popen('find . -name ' + fileRegex):
# remove carriage return characters from file name
orgFileName = fileName[:-1]
os.system("mv " + orgFileName + " " + self.context.getConfiguration().getNebisWorking())
lastCharsOfFilename = orgFileName[-2:]
if lastCharsOfFilename == self.context.getConfiguration().getFileNameSuffix():
os.system("gunzip " + self.context.getConfiguration().getNebisWorking() + os.sep + orgFileName)
time.sleep(2)
# onlyFile = os.path.basename(orgFileName)
def process(self):
os.chdir(self.context.getConfiguration().getNebisWorking())
searchedPrefix = self.context.getConfiguration().getNetworkPrefix() + "-"
pfilePart = re.compile(searchedPrefix + '(.*)', re.UNICODE | re.DOTALL | re.IGNORECASE)
for fileName in glob.glob(self.context.getConfiguration().getNetworkPrefix() + '-*' ):
fileMatching = pfilePart.search(fileName)
if fileMatching:
currentDate = '{:%Y%m%d%H%M%S}'.format(datetime.now())
compoundOutputFile = "".join(
[searchedPrefix, currentDate, '-', fileMatching.group(1)]).strip('\n')
try:
wC = FileWebdavWriteContext(self.context)
wC.setOutFileName(compoundOutputFile)
self.context.setWriteContext(wC)
sfC = SummonRecordProvider(self.context,fileName)
self.processFileContent(sfC)
wC.closeWriteContext()