diff --git a/bifrost_chewbbaca/run_standalone.py b/bifrost_chewbbaca/run_standalone.py index 5bc860d..6050a16 100755 --- a/bifrost_chewbbaca/run_standalone.py +++ b/bifrost_chewbbaca/run_standalone.py @@ -34,17 +34,6 @@ class BifrostchewBBACA: output_dir = f"{bifrost_install_dir}/bifrost/test_data/output/test__chewbbaca/" sample_dir = f"{bifrost_install_dir}/bifrost/test_data/samples/SRR2094561.fasta" - sample_template = { - "name": "SRR2094561", - "components": [], - "categories": { - "contigs": {"summary": {"data": sample_dir}}, - "species_detection": { - "summary": {"detected_species": "Salmonella enterica"} - }, - }, - } - @staticmethod def clear_all_collections(db): db.drop_collection("components")