From ee7084e2efbde45c1ce462098ca7364664f2df3e Mon Sep 17 00:00:00 2001 From: Andrew D Smith Date: Mon, 22 Jul 2024 19:54:32 -0700 Subject: [PATCH] src/dnmtools.cpp: removing the lc command as that functionality is being removed --- src/dnmtools.cpp | 3 --- 1 file changed, 3 deletions(-) diff --git a/src/dnmtools.cpp b/src/dnmtools.cpp index 49b8df2..5ba9074 100644 --- a/src/dnmtools.cpp +++ b/src/dnmtools.cpp @@ -114,8 +114,6 @@ main_format(int argc, const char **argv); int main_guessprotocol(int argc, const char **argv); int -main_lc_approx(int argc, const char **argv); -int main_lift_filter(int argc, const char **argv); int main_merge_bsrate(int argc, const char **argv); @@ -202,7 +200,6 @@ main(int argc, const char **argv) { {"utilities", {{{"cleanhp", "fix and stat invdup/hairping reads", main_clean_hairpins}, {"guessprotocol", "guess whether protocol is ordinary, pbat or random", main_guessprotocol}, - {"lc", "approximate line counts in a file", main_lc_approx}, {"merge-bsrate", "merge bisulfite conversion rates files from bsrate", main_merge_bsrate}, {"merge", "merge multiple counts files into a counts file or a table", main_merge_methcounts}, {"covered", "filter a counts file for only covered sites", main_covered},