[Bug] pip error on Windows

[bookSiYi1412]

Describe the bug
An error occurred when I attempted to install the package using the command pip install tiledbsoma --verbose on Windows system. The output is provided in the "Additional context" section.

To Reproduce
pip install tiledbsoma --verbose

Versions (please complete the following information):

• TileDB-SOMA version: 1.14.5 and 1.13 else
• Language and language version (e.g. Python 3.9, R 4.3.2): Python 3.10
• OS (e.g. MacOS, Ubuntu Linux): Windows
• Note: you can use tiledbsoma.show_package_versions() (Python) or tiledbsoma::show_package_versions() (R)

Additional context
Add any other context about the problem here.

Collecting tiledbsoma
Using cached tiledbsoma-1.14.5.tar.gz (454 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... error
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [31 lines of output]
Traceback (most recent call last):
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in
main()
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 118, in get_requires_for_build_wheel
return hook(config_settings)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-bh1013wj\overlay\Lib\site-packages\setuptools\build_meta.py", line 333, in get_requires_for_build_wheel
return self._get_build_requires(config_settings, requirements=[])
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-bh1013wj\overlay\Lib\site-packages\setuptools\build_meta.py", line 303, in _get_build_requires
self.run_setup()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-bh1013wj\overlay\Lib\site-packages\setuptools\build_meta.py", line 319, in run_setup
exec(code, locals())
File "", line 347, in
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-zs5tt3pw\tiledbsoma_465118cdfe714d2fb1a62e9606d11ce6\version.py", line 274, in get_version
version = get_git_version()
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-zs5tt3pw\tiledbsoma_465118cdfe714d2fb1a62e9606d11ce6\version.py", line 189, in get_git_version
git_root = line("git", "rev-parse", "--show-toplevel")
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-zs5tt3pw\tiledbsoma_465118cdfe714d2fb1a62e9606d11ce6\version.py", line 119, in line
lns = lines(*cmd, **kwargs)
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-zs5tt3pw\tiledbsoma_465118cdfe714d2fb1a62e9606d11ce6\version.py", line 108, in lines
for ln in check_output(cmd, stderr=stderr, **kwargs).decode().splitlines()
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 421, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 503, in run
with Popen(*popenargs, **kwargs) as process:
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 971, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 1456, in _execute_child
hp, ht, pid, tid = _winapi.CreateProcess(executable, args,
FileNotFoundError: [WinError 2] 系统找不到指定的文件。
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

(db) C:\Users\Administrator>python -m pip install tiledbsoma=1.13
ERROR: Invalid requirement: 'tiledbsoma=1.13': Expected end or semicolon (after name and no valid version specifier)
tiledbsoma=1.13
^
Hint: = is not a valid operator. Did you mean == ?

(db) C:\Users\Administrator>python -m pip install tiledbsoma==1.13
Collecting tiledbsoma==1.13
Downloading tiledbsoma-1.13.0.tar.gz (428 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... error
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [31 lines of output]
Traceback (most recent call last):
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in
main()
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 118, in get_requires_for_build_wheel
return hook(config_settings)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-fg83ntgh\overlay\Lib\site-packages\setuptools\build_meta.py", line 333, in get_requires_for_build_wheel
return self._get_build_requires(config_settings, requirements=[])
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-fg83ntgh\overlay\Lib\site-packages\setuptools\build_meta.py", line 303, in _get_build_requires
self.run_setup()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-fg83ntgh\overlay\Lib\site-packages\setuptools\build_meta.py", line 319, in run_setup
exec(code, locals())
File "", line 354, in
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-lrk2sw9l\tiledbsoma_753006e387d044f5ae68a387548e45ef\version.py", line 274, in get_version
version = get_git_version()
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-lrk2sw9l\tiledbsoma_753006e387d044f5ae68a387548e45ef\version.py", line 189, in get_git_version
git_root = line("git", "rev-parse", "--show-toplevel")
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-lrk2sw9l\tiledbsoma_753006e387d044f5ae68a387548e45ef\version.py", line 119, in line
lns = lines(*cmd, **kwargs)
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-lrk2sw9l\tiledbsoma_753006e387d044f5ae68a387548e45ef\version.py", line 108, in lines
for ln in check_output(cmd, stderr=stderr, **kwargs).decode().splitlines()
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 421, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 503, in run
with Popen(*popenargs, **kwargs) as process:
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 971, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 1456, in _execute_child
hp, ht, pid, tid = _winapi.CreateProcess(executable, args,
FileNotFoundError: [WinError 2] 系统找不到指定的文件。
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

(db) C:\Users\Administrator>pip uninstall tiledbsoma
WARNING: Skipping tiledbsoma as it is not installed.

(db) C:\Users\Administrator>pip uninstall tiledb
Found existing installation: tiledb 0.29.0
Uninstalling tiledb-0.29.0:
Would remove:
d:\administrator\miniconda3\envs\db\lib\site-packages\ci
d:\administrator\miniconda3\envs\db\lib\site-packages\examples
d:\administrator\miniconda3\envs\db\lib\site-packages\external
d:\administrator\miniconda3\envs\db\lib\site-packages\misc
d:\administrator\miniconda3\envs\db\lib\site-packages\tiledb
d:\administrator\miniconda3\envs\db\lib\site-packages\tiledb-0.29.0-py3.10.egg-info
Proceed (Y/n)? y
Successfully uninstalled tiledb-0.29.0

(db) C:\Users\Administrator>pip uninstall tiledbsoma --verbose
WARNING: Skipping tiledbsoma as it is not installed.

(db) C:\Users\Administrator>pip install tiledbsoma --verbose
Using pip 24.2 from D:\Administrator\miniconda3\envs\db\lib\site-packages\pip (python 3.10)
Collecting tiledbsoma
Using cached tiledbsoma-1.14.5.tar.gz (454 kB)
Running command pip subprocess to install build dependencies
Using pip 24.2 from D:\Administrator\miniconda3\envs\db\Lib\site-packages\pip (python 3.10)
Collecting pybind11>=2.10.0 (from pybind11[global]>=2.10.0)
Obtaining dependency information for pybind11>=2.10.0 from https://files.pythonhosted.org/packages/13/2f/0f24b288e2ce56f51c920137620b4434a38fd80583dbbe24fc2a1656c388/pybind11-2.13.6-py3-none-any.whl.metadata
Using cached pybind11-2.13.6-py3-none-any.whl.metadata (9.5 kB)
Collecting setuptools>=65.5.1
Obtaining dependency information for setuptools>=65.5.1 from https://files.pythonhosted.org/packages/90/12/282ee9bce8b58130cb762fbc9beabd531549952cac11fc56add11dcb7ea0/setuptools-75.3.0-py3-none-any.whl.metadata
Using cached setuptools-75.3.0-py3-none-any.whl.metadata (6.9 kB)
Collecting wheel>=0.37.1
Obtaining dependency information for wheel>=0.37.1 from https://files.pythonhosted.org/packages/1b/d1/9babe2ccaecff775992753d8686970b1e2755d21c8a63be73aba7a4e7d77/wheel-0.44.0-py3-none-any.whl.metadata
Using cached wheel-0.44.0-py3-none-any.whl.metadata (2.3 kB)
Collecting cmake>=3.21
Obtaining dependency information for cmake>=3.21 from https://files.pythonhosted.org/packages/74/ed/6624adba772329c9c8a9765ee2ee06df7082ad7ac75cf33200d405c4c45f/cmake-3.30.5-py3-none-win_amd64.whl.metadata
Using cached cmake-3.30.5-py3-none-win_amd64.whl.metadata (6.4 kB)
Collecting pybind11-global==2.13.6 (from pybind11[global]>=2.10.0)
Obtaining dependency information for pybind11-global==2.13.6 from https://files.pythonhosted.org/packages/21/ee/8ab74ca797f609bc5563fb6989c02a0535d8b836c7ec6c45c8a37b19950f/pybind11_global-2.13.6-py3-none-any.whl.metadata
Using cached pybind11_global-2.13.6-py3-none-any.whl.metadata (9.4 kB)
Using cached pybind11-2.13.6-py3-none-any.whl (243 kB)
Using cached setuptools-75.3.0-py3-none-any.whl (1.3 MB)
Using cached wheel-0.44.0-py3-none-any.whl (67 kB)
Using cached cmake-3.30.5-py3-none-win_amd64.whl (35.6 MB)
Using cached pybind11_global-2.13.6-py3-none-any.whl (439 kB)
Installing collected packages: wheel, setuptools, pybind11-global, pybind11, cmake
Creating C:\Users\Administrator\AppData\Local\Temp\pip-build-env-t7w3a8or\overlay\Scripts
Successfully installed cmake-3.30.5 pybind11-2.13.6 pybind11-global-2.13.6 setuptools-75.3.0 wheel-0.44.0
Installing build dependencies ... done
Running command Getting requirements to build wheel
Traceback (most recent call last):
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in
main()
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 118, in get_requires_for_build_wheel
return hook(config_settings)
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-t7w3a8or\overlay\Lib\site-packages\setuptools\build_meta.py", line 333, in get_requires_for_build_wheel
return self._get_build_requires(config_settings, requirements=[])
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-t7w3a8or\overlay\Lib\site-packages\setuptools\build_meta.py", line 303, in _get_build_requires
self.run_setup()
File "C:\Users\Administrator\AppData\Local\Temp\pip-build-env-t7w3a8or\overlay\Lib\site-packages\setuptools\build_meta.py", line 319, in run_setup
exec(code, locals())
File "", line 347, in
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-gtkujhka\tiledbsoma_1fc5027fb6c946c68d3537011612be26\version.py", line 274, in get_version
version = get_git_version()
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-gtkujhka\tiledbsoma_1fc5027fb6c946c68d3537011612be26\version.py", line 189, in get_git_version
git_root = line("git", "rev-parse", "--show-toplevel")
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-gtkujhka\tiledbsoma_1fc5027fb6c946c68d3537011612be26\version.py", line 119, in line
lns = lines(*cmd, **kwargs)
File "C:\Users\Administrator\AppData\Local\Temp\pip-install-gtkujhka\tiledbsoma_1fc5027fb6c946c68d3537011612be26\version.py", line 108, in lines
for ln in check_output(cmd, stderr=stderr, **kwargs).decode().splitlines()
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 421, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 503, in run
with Popen(*popenargs, **kwargs) as process:
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 971, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "D:\Administrator\miniconda3\envs\db\lib\subprocess.py", line 1456, in _execute_child
hp, ht, pid, tid = _winapi.CreateProcess(executable, args,
FileNotFoundError: [WinError 2] 系统找不到指定的文件。
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
full command: 'D:\Administrator\miniconda3\envs\db\python.exe' 'D:\Administrator\miniconda3\envs\db\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py' get_requires_for_build_wheel 'C:\Users\Administrator\AppData\Local\Temp\tmpbrocnbis'
cwd: C:\Users\Administrator\AppData\Local\Temp\pip-install-gtkujhka\tiledbsoma_1fc5027fb6c946c68d3537011612be26
Getting requirements to build wheel ... error
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

[johnkerl]

@bookSiYi1412 thank you for your report!

Unfortunately, TileDB-SOMA is not yet supported on Windows.

[johnkerl]

Duplicate of #2631.