Different order of MLST alleles to Leptospira

[ghost]

Dear sanger-pathogens

I'm working with mlst_check and I found this issue. The concatenates file contain DNA sequence of all alleles (glmU, pntA, sucA, tpiA, pfkB, mreA, and caiB) but the order is not correct. When I uploaded the concatenates file in https://pubmlst.org/bigsdb?db=pubmlst_leptospira_seqdef&page=sequenceQuery, the output is:

glmU1 | 1 | 444 | Query | 403 | 846 |  
pntA1 | 1 | 525 | Query | 1714 | 2238 |  
sucA1 | 2 | 447 | Query | 2239 | 2685 |  
tpiA1 | 2 | 426 | Query | 2686 | 3111 |  
pfkB1 | 10 | 432 | Query | 1282 | 1713 |  
mreA1 | 4 | 435 | Query | 847 | 1281 |  
caiB1 | 8 | 402 | Query | 1 | 402 |

As you can see, the order and coordinates are different. So, I would like to know where do I change the order of allele into the get_sequence_type script?

Looking forward to your answer.

Sincerely yours,

MARS