forked from weecology/sad-comparison
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathsad_comparison_refs.bib
478 lines (428 loc) · 13.7 KB
/
sad_comparison_refs.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
@article{alroy2015,
title={The shape of terrestrial abundance distributions},
author={Alroy, John},
journal={Science advances},
volume={1},
number={8},
pages={e1500082},
year={2015},
publisher={American Association for the Advancement of Science}
}
@article{Baldridge2013,
author = "Elita Baldridge",
title = "{Community abundance data}",
year = "2013",
month = "08",
url = "http://dx.doi.org/10.6084/m9.figshare.769251"
}
@article{beck2012,
title={What's on the horizon for macroecology?},
author={Beck, Jan and Ballesteros-Mejia, Liliana and Buchmann, Carsten M and Dengler, J{\"u}rgen and Fritz, Susanne A and Gruber, Bernd and Hof, Christian and Jansen, Florian and Knapp, Sonja and Kreft, Holger and others},
journal={Ecography},
volume={35},
number={8},
pages={673--683},
year={2012},
publisher={Wiley Online Library}
}
@article{blonder2014,
title={Separating Macroecological Pattern and Process: Comparing Ecological, Economic, and Geological Systems},
author={Blonder, Benjamin and Sloat, Lindsey and Enquist, Brian J and McGill, Brian},
journal={PloS one},
volume={9},
number={11},
pages={e112850},
year={2014},
publisher={Public Library of Science}
}
@article{boswell1971,
title={Chance mechanisms generating the logarithmic series distribution used in the analysis of number of species and individuals},
author={Boswell, MT and Patil, GP},
journal={Statistical ecology},
volume={1},
pages={99--130},
year={1971},
publisher={Patil, GP, Pielou, EC \& Waters, WE). Pennsylvania State University Press, University Park, PA}
}
@article{bulmer1974,
title={On fitting the Poisson lognormal distribution to species-abundance data},
author={Bulmer, MG},
journal={Biometrics},
pages={101--110},
year={1974},
publisher={JSTOR}
}
@book{burnham2002,
title={Model selection and multimodel inference: a practical information-theoretic approach},
author={Burnham, Kenneth P and Anderson, David R},
year={2002},
publisher={Springer}
}
@book{cbc,
title={The Christmas Bird Count historical results},
author={National Audubon Society},
year={2002},
publisher={National Audobon Society, New York, New York, USA.},
url={http://www.audubon.org/bird/cbc}
}
@article{clark1999,
title={Generalizations of power-law distributions applicable to sampled fault-trace lengths: model choice, parameter estimation and caveats},
author={Clark, RM and Cox, SJD and Laslett, GM},
journal={Geophysical Journal International},
volume={136},
number={2},
pages={357--372},
year={1999},
publisher={Oxford University Press}
}
@article{cohen1968,
title={Alternate derivations of a species-abundance relation},
author={Cohen, Joel E},
journal={American naturalist},
pages={165--172},
year={1968},
publisher={JSTOR}
}
@article{connolly2014,
title={Commonness and rarity in the marine biosphere},
author={Connolly, Sean R and MacNeil, M Aaron and Caley, M Julian and Knowlton, Nancy and Cripps, Ed and Hisano, Mizue and Thibaut, Lo{\"\i}c M and Bhattacharya, Bhaskar D and Benedetti-Cecchi, Lisandro and Brainard, Russell E and others},
journal={Proceedings of the National Academy of Sciences},
pages={8524-8529 },
year={2014},
publisher={National Acad Sciences}
}
@article{edwards2007,
title={Revisiting L{\'e}vy flight search patterns of wandering albatrosses, bumblebees and deer},
author={Edwards, Andrew M and Phillips, Richard A and Watkins, Nicholas W and Freeman, Mervyn P and Murphy, Eugene J and Afanasyev, Vsevolod and Buldyrev, Sergey V and da Luz, Marcos GE and Raposo, Ernesto P and Stanley, H Eugene and others},
journal={Nature},
volume={449},
number={7165},
pages={1044--1048},
year={2007},
publisher={Nature Publishing Group}
}
@article{engen1996,
title={Population dynamic models generating species abundance distributions of the gamma type},
author={Engen, Steinar and Lande, Russell},
journal={Journal of Theoretical Biology},
volume={178},
number={3},
pages={325--331},
year={1996},
publisher={Elsevier}
}
@book{fia,
title={Forest inventory and analysis national core field guide (Phase 2 and 3). Version 4.0.},
author={[FIA USDA Forest Service},
year={2010},
publisher={USDA Forest Service, Forest Inventory and Analysis}
}
@article{fisher1943,
title={The relation between the number of species and the number of individuals in a random sample of an animal population},
author={Fisher, Ronald Aylmer and Corbet, A Steven and Williams, Carrington B},
journal={The Journal of Animal Ecology},
pages={42--58},
year={1943},
publisher={JSTOR}
}
@article{frank2009,
title={The common patterns of nature},
author={Frank, Steven A},
journal={Journal of evolutionary biology},
volume={22},
number={8},
pages={1563--1585},
year={2009},
publisher={Wiley Online Library}
}
@article{frank2011,
title={Measurement scale in maximum entropy models of species abundance},
author={Frank, Steven A},
journal={Journal of evolutionary biology},
volume={24},
number={3},
pages={485--496},
year={2011},
publisher={Wiley Online Library}
}
@article{frank2014,
title={Generative models versus underlying symmetries to explain biological pattern},
author={Frank, Steven A},
journal={Journal of evolutionary biology},
volume={27},
number={6},
pages={1172--1178},
year={2014},
publisher={Wiley Online Library}
}
@article{harte2008,
title={Maximum entropy and the state-variable approach to macroecology},
author={Harte, J and Zillio, T and Conlisk, E and Smith, AB},
journal={Ecology},
volume={89},
number={10},
pages={2700--2711},
year={2008},
publisher={Eco Soc America}
}
@book{harte2011,
title={Maximum entropy and ecology: a theory of abundance, distribution, and energetics},
author={Harte, John},
year={2011},
publisher={Oxford University Press}
}
@book{hubbell2001,
title={The unified neutral theory of biodiversity and biogeography (MPB-32)},
author={Hubbell, Stephen P},
volume={32},
year={2001},
publisher={Princeton University Press}
}
@article{hughes1986,
title={Theories and models of species abundance},
author={Hughes, RG},
journal={American Naturalist},
pages={879--899},
year={1986},
publisher={JSTOR}
}
@article{locey2013,
title={How species richness and total abundance constrain the distribution of abundance},
author={Locey, Kenneth J and White, Ethan P},
journal={Ecology letters},
volume={16},
number={9},
pages={1177--1185},
year={2013},
publisher={Wiley Online Library}
}
@article{macnally2014,
title={The control of rank-abundance distributions by a competitive despotic species},
author={Mac Nally, Ralph and McAlpine, Clive A and Possingham, Hugh P and Maron, Martine},
journal={Oecologia},
volume={176},
number={3},
pages={849--857},
year={2014},
publisher={Springer}
}
@article{mannino2002depletion,
title={Depletion of a resource? The impact of prehistoric human foraging on intertidal mollusc communities and its significance for human settlement, mobility and dispersal},
author={Mannino, Marcello A and Thomas, Kenneth D},
journal={World Archaeology},
volume={33},
number={3},
pages={452--474},
year={2002},
publisher={Taylor \& Francis}
}
@article{matthews2014,
title={Fitting and comparing competing models of the species abundance distribution: assessment and prospect},
author={Matthews, Thomas J and Whittaker, Robert J},
journal={Frontiers of Biogeography},
volume={6},
number={2},
year={2014}
}
@article{may1975,
title={Patterns of species abundance and diversity},
author={May, Robert M},
journal={Ecology and evolution of communities},
pages={81--120},
year={1975},
publisher={Harvard University Press}
}
@article{mcgill2003,
title={A test of the unified neutral theory of biodiversity},
author={McGill, Brian J},
journal={Nature},
volume={422},
number={6934},
pages={881--885},
year={2003},
publisher={Nature Publishing Group}
}
@article{mcgill2006,
title={Empirical evaluation of neutral theory},
author={McGill, Brian J and Maurer, Brian A and Weiser, Michael D},
journal={Ecology},
volume={87},
number={6},
pages={1411--1423},
year={2006},
publisher={Eco Soc America}
}
@article{mcgill2007,
title={Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework},
author={McGill, Brian J and Etienne, Rampal S and Gray, John S and Alonso, David and Anderson, Marti J and Benecha, Habtamu Kassa and Dornelas, Maria and Enquist, Brian J and Green, Jessica L and He, Fangliang and others},
journal={Ecology letters},
volume={10},
number={10},
pages={995--1015},
year={2007},
publisher={Wiley Online Library}
}
@article{morlon2009,
title={Taking species abundance distributions beyond individuals},
author={Morlon, H{\'e}l{\`e}ne and White, Ethan P and Etienne, Rampal S and Green, Jessica L and Ostling, Annette and Alonso, David and Enquist, Brian J and He, Fangliang and Hurlbert, Allen and Magurran, Anne E and others},
journal={Ecology Letters},
volume={12},
number={6},
pages={488--501},
year={2009},
publisher={Wiley Online Library}
}
@article{morris2013,
title={The EcoData Retriever: Improving Access to Existing Ecological Data},
author={Morris, Benjamin D and White, Ethan P},
journal={PloS one},
volume={8},
number={6},
pages={e65848},
year={2013},
publisher={Public Library of Science}
}
@article{motomura1932,
title={On the statistical treatment of communities},
author={Motomura, I},
journal={Zool. Mag},
volume={44},
pages={379--383},
year={1932}
}
@book{naba,
title={NABA butterfly counts: 2009 Report},
author={[NABA North American Butterfly Association},
year={2009},
publisher={NABA, Morristown, New Jersey, USA},
url={http://www.naba.org}
}
@article{newman2005,
title={Power laws, Pareto distributions and Zipf's law},
author={Newman, Mark EJ},
journal={Contemporary physics},
volume={46},
number={5},
pages={323--351},
year={2005},
publisher={Taylor \& Francis}
}
@article{newman2014,
title={Empirical tests of within-and across-species energetics in a diverse plant community},
author={Newman, Erica Anna and Harte, Mary Ellen and Lowell, Natalie and Wilber, Mark and Harte, John},
journal={Ecology},
year={2014},
publisher={Eco Soc America}
}
@book{pardieck2014,
title={North American Breeding Bird Survey Dataset 1966 - 2013, version 2013.0},
author={Pardieck, Keith L and Ziolkowski Jr, David J and Hudson, M.-A.R.},
year={2014},
publisher={U.S. Geological Survey, Patuxent Wildlife Research Center},
url={http://www.pwrc.usgs.gov/BBS/RawData/}
}
@book{phillips2002,
title={Global patterns of plant diversity: Alwyn H. Gentry's forest transect data set},
author={Phillips, Oliver and Miller, James S},
year={2002},
publisher={Missouri Botanical Garden Press St., Louis, Missouri}
}
@misc{pielou1975,
title={Ecological diversity},
year={1975},
author={Pielou, EC},
publisher={Wiley, New York}
}
@article{pueyo2007,
title={The maximum entropy formalism and the idiosyncratic theory of biodiversity},
author={Pueyo, Salvador and He, Fangliang and Zillio, Tommaso},
journal={Ecology Letters},
volume={10},
number={11},
pages={1017--1028},
year={2007},
publisher={Wiley Online Library}
}
@article{sugihara1980,
title={Minimal community structure: an explanation of species abundance patterns},
author={Sugihara, George},
journal={American naturalist},
pages={770--787},
year={1980},
publisher={JSTOR}
}
@article{thibault2011,
title={Species composition and abundance of mammalian communities: Ecological Archives E092-201},
author={Thibault, Katherine M and Supp, Sarah R and Giffin, Mikaelle and White, Ethan P and Ernest, SK Morgan},
journal={Ecology},
volume={92},
number={12},
pages={2316--2316},
year={2011},
publisher={Eco Soc America}
}
@article{tokeshi1993,
title={Species abundance patterns and community structure},
author={Tokeshi, M},
journal={Advances in ecological research},
volume={24},
pages={111--186},
year={1993},
publisher={Elsevier}
}
@article{ulrich2010,
title={A meta-analysis of species--abundance distributions},
author={Ulrich, Werner and Ollik, Marcin and Ugland, Karl Inne},
journal={Oikos},
volume={119},
number={7},
pages={1149--1155},
year={2010},
publisher={Wiley Online Library}
}
@article{volkov2003,
title={Neutral theory and relative species abundance in ecology},
author={Volkov, Igor and Banavar, Jayanth R and Hubbell, Stephen P and Maritan, Amos},
journal={Nature},
volume={424},
number={6952},
pages={1035--1037},
year={2003},
publisher={Nature Publishing Group}
}
@article{volkov2005,
title={Density dependence explains tree species abundance and diversity in tropical forests},
author={Volkov, Igor and Banavar, Jayanth R and He, Fangliang and Hubbell, Stephen P and Maritan, Amos},
journal={Nature},
volume={438},
number={7068},
pages={658--661},
year={2005},
publisher={Nature Publishing Group}
}
@article{white2008,
title={On estimating the exponent of power-law frequency distributions},
author={White, Ethan P and Enquist, Brian J and Green, Jessica L},
journal={Ecology},
volume={89},
number={4},
pages={905--912},
year={2008},
publisher={Eco Soc America}
}
@article{white2012,
title={Characterizing species abundance distributions across taxa and ecosystems using a simple maximum entropy model},
author={White, Ethan P and Thibault, Katherine M and Xiao, Xiao},
journal={Ecology},
volume={93},
number={8},
pages={1772--1778},
year={2012},
publisher={Eco Soc America}
}
@article{xiao2015,
title={A strong test of the Maximum Entropy Theory of Ecology},
author={Xiao, Xiao and McGlinn, Daniel J and White, Ethan P},
journal={American Naturalist},
year={2015}
}