diff --git a/.github/workflows/fast-model-mpi-explosion.yml b/.github/workflows/fast-model-mpi-explosion.yml index b579ef7cf..d26d72506 100644 --- a/.github/workflows/fast-model-mpi-explosion.yml +++ b/.github/workflows/fast-model-mpi-explosion.yml @@ -20,7 +20,7 @@ jobs: pip3 install pytest pytest-cov pytest-randomly coverage black # TODO: Remove fixed numpy and pynn versions after the PyNN pull request # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted - pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba + pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx - name: Download and install imagen run: | git clone https://github.com/antolikjan/imagen.git diff --git a/.github/workflows/fast-model-mpi.yml b/.github/workflows/fast-model-mpi.yml index d389e59ef..fcc6f3a82 100644 --- a/.github/workflows/fast-model-mpi.yml +++ b/.github/workflows/fast-model-mpi.yml @@ -20,7 +20,7 @@ jobs: pip3 install pytest pytest-cov pytest-randomly coverage black # TODO: Remove fixed numpy and pynn versions after the PyNN pull request # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted - pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba + pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx - name: Download and install imagen run: | git clone https://github.com/antolikjan/imagen.git diff --git a/.github/workflows/fast-model-stepcurrentmodule.yml b/.github/workflows/fast-model-stepcurrentmodule.yml index 09428621b..2df5c6492 100644 --- a/.github/workflows/fast-model-stepcurrentmodule.yml +++ b/.github/workflows/fast-model-stepcurrentmodule.yml @@ -19,7 +19,7 @@ jobs: pip3 install pytest pytest-cov pytest-randomly coverage black # TODO: Remove fixed numpy and pynn versions after the PyNN pull request # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted - pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba + pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx - name: Download and install imagen run: | diff --git a/.github/workflows/fast-model.yml b/.github/workflows/fast-model.yml index d41318a7f..c8475681a 100644 --- a/.github/workflows/fast-model.yml +++ b/.github/workflows/fast-model.yml @@ -19,7 +19,7 @@ jobs: pip3 install pytest pytest-cov pytest-randomly coverage black # TODO: Remove fixed numpy and pynn versions after the PyNN pull request # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted - pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba + pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx - name: Download and install imagen run: | diff --git a/.github/workflows/lsv1m-model.yml b/.github/workflows/lsv1m-model.yml index 941bae903..ae6ceaaae 100644 --- a/.github/workflows/lsv1m-model.yml +++ b/.github/workflows/lsv1m-model.yml @@ -19,7 +19,7 @@ jobs: pip3 install pytest pytest-cov pytest-randomly coverage black # TODO: Remove fixed numpy and pynn versions after the PyNN pull request # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted - pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba + pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx - name: Download and install imagen run: | diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml index b969b8411..29aceccee 100644 --- a/.github/workflows/unit-tests.yml +++ b/.github/workflows/unit-tests.yml @@ -19,7 +19,7 @@ jobs: pip3 install pytest pytest-cov pytest-randomly coverage black # TODO: Remove fixed numpy and pynn versions after the PyNN pull request # https://github.com/NeuralEnsemble/PyNN/pull/762 is accepted - pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba + pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython pynn==0.10.0 psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx - name: Download and install imagen run: | diff --git a/README.rst b/README.rst index 34527f271..4dcece344 100644 --- a/README.rst +++ b/README.rst @@ -51,7 +51,7 @@ ____________ Now you can install all other dependencies in this protected environment:: - pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba + pip3 install numpy==1.23.5 scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx Next we will manually install several packages. It is probably the best if you create a separate directory in an appropriate place, where you will download and install the packages from.